Index

A

acid-fast bacilli (AFB) smear active case finding (ACF) active tuberculosis disease agent-based model

antibodies antibody antigen antigens

B

bacille Calmette-Guerin (BCG) vaccine

Boost boxcar function

C

campaign campaign event campaign file cascade of care channel class factory

Clausius-Clayperon relation compartmental model configuration file contact investigation continuation phase core

D

demographics file deterministic diffusive migration

directly observed treatment, short-course (DOTS) disability-adjusted life years (DALY) disease-specific build dynamic link library (DLL)

E

EMODule empiric treatment enhanced case finding (ECF) epidemic Epidemiological MODeling software (EMOD) epitope

Eradication.exe ethambutol Euler method event coordinator exp( exposed extrapulmonary TB

F

flattened file

force of infection (FoI)

G

granuloma

H

herd immunity Heterogeneous Intra-Node Transmission (HINT)

high-performance computing (HPC) HIV coinfection

I

immune incidence individual properties infectious

input files inset chart intensive phase intervention isoniazid

J

JSON (JavaScript Object Notation)

K

Keyhole Markup Language (KML)

Koppen-Geiger Climate Classification System

L

latent tuberculosis infection (LTBI) Link-Time Code Generation (LTCG)

loss to follow-up (LTFU) LTFU

M

Message Passing Interface (MPI) microsolver monolithic build

Monte Carlo method multidrug-resistant tuberculosis (MDR-TB) Mycobacterium tuberculosis

N

node node properties

node-targeted intervention nodes

O

ordinary differential equation (ODE)

output report overlay file

P

passive case finding (PCF) presymptomatic active TB prevalence preview

primary drug resistance primary TB infection pulmonary TB pyrazinamide

R

recovered regression test release

reporter reproductive number rifampicin routine immunization (RI)

S

scenario schema secondary drug resistance SEIR model SEIRS model SI model simulation simulation burn-in simulation type SIR model SIRS model SIS model

smear-negative TB smear-positive TB solvers sputum sputum culture Standard Template Library (STL) state transition event stochastic stochastic die-out subpatent superinfection supplemental immunization activity (SIA) susceptible

T

TB reactivation time step

transmissibility (\beta) tuberculin skin test tutorial

V

virulence

W

WAIFW matrix

Weibull distribution working directory