Vector species output report¶
The vector species output report is a JSON-formatted file where the channel data has been sorted into bins. It is identical to the Binned output report, with the exception that the bins are based on vector species. The vector species report is generated for all malaria or vector simulations that contain values in the Vector_Species_Names configuration parameter. For example, if Vector_Species_Names was set to [“funestus”, “gambiae”], you would be able to see how many infectious vectors there were for A. funestus and A. gambiae. The file name is VectorSpeciesReport.json.
Example¶
The following is a sample of an VectorSpeciesReport.json file.
{
"Header": {
"DateTime": "Thu Jul 23 13:06:54 2015",
"DTK_Version": "5004 trunk Jun 25 2015",
"Report_Version": "2.1",
"Timesteps": 100,
"Subchannel_Metadata": {
"AxisLabels": [
["Vector Species"]
],
"NumBinsPerAxis": [
[1]
],
"ValuesPerAxis": [
[
[0]
]
],
"MeaningPerAxis": [
[
["arabiensis"]
]
]
},
"Channels": 4
},
"Channels": {
"Adult Vectors": {
"Units": "",
"Data": [
[8739, 7627, 6712, 5882, 5174, 4577, 4003, 3500, 3086, 2691, 2340, 2038, 1790, 1562, 1367, 1191, 1045, 924, 801, 704, 620, 540, 472, 412, 353, 314, 1188, 2198, 2152, 3738, 3706, 3918, 6105, 6197, 6897, 6632, 6656, 6858, 6748, 6390, 6300, 5540, 5284, 5230, 5744, 5487, 5689, 5563, 5935, 6077, 6091, 6123, 5970, 5879, 5956, 6220, 6315, 6361, 6144, 5943, 5193, 6508, 6692, 8009, 8139, 7800, 8575, 8431, 8126, 9099, 8682, 8691, 8499, 8901, 8603, 8359, 8135, 8068, 7890, 6884, 6667, 7782, 6809, 7698, 7520, 7447, 6513, 8771, 7674, 7577, 8048, 8304, 8448, 8710, 8881, 10137, 9867, 9320, 9019, 9754]
]
},
"Daily EIR": {
"Units": "",
"Data": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.00400000018999, 0, 0.006000000052154, 0.01200000010431, 0.01200000010431, 0.006000000052154, 0.01200000010431, 0.01400000043213, 0.01999999955297, 0.04399999976158, 0.0380000025034, 0.03400000184774, 0.03400000184774, 0.02400000020862, 0.02600000053644, 0.03400000184774, 0.0379999987781, 0.03999999910593, 0.04600000008941, 0.04600000008941, 0.04399999976158, 0.05599999800324, 0.03200000151992, 0.02400000020862, 0.0380000025034, 0.02000000141561, 0.02799999900162, 0.01999999955297, 0.01800000108778, 0.01400000043213, 0.009999999776483, 0.00800000037998, 0.00800000037998, 0.009999999776483, 0.006000000052154, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0, 0.002000000094995, 0.00400000018999, 0.002000000094995, 0.00800000037998, 0.006000000052154, 0.01799999922514, 0.01799999922514, 0.02400000020862, 0.02999999932945, 0.02799999900162, 0.02400000020862, 0.06000000238419]
]
},
"Daily HBR": {
"Units": "",
"Data": [
[5.640000343323, 4.909999847412, 4.430000305176, 3.762000083923, 3.458000183105, 2.966000080109, 2.68799996376, 2.226000070572, 2.041999816895, 1.78200006485, 1.50200009346, 1.351999998093, 1.195999979973, 1.089999914169, 0.8100000023842, 0.7920000553131, 0.6539999842644, 0.6039999723434, 0.539999961853, 0.4399999976158, 0.4039999842644, 0.3779999911785, 0.2840000092983, 0.2580000162125, 0.2320000082254, 0.2260000109673, 0.1800000071526, 0.6340000033379, 1.213999986649, 1.22000002861, 2.179999828339, 2.012000083923, 2.232000112534, 3.400000095367, 3.461999893188, 4.038000106812, 3.802000045776, 3.886000156403, 3.869999885559, 3.860000133514, 3.598000049591, 3.567999839783, 3.078000068665, 3.067999839783, 2.969999790192, 3.317999839783, 3.110000133514, 3.234000205994, 3.339999914169, 3.555999994278, 3.575999975204, 3.644000053406, 3.519999980927, 3.434000015259, 3.369999885559, 3.398000001907, 3.438000202179, 3.661999940872, 3.786000013351, 3.584000110626, 3.3140001297, 3.067999839783, 3.817999839783, 3.6859998703, 4.696000099182, 4.748000144958, 4.466000080109, 4.932000160217, 4.828000068665, 4.760000228882, 5.244000434875, 5.083999633789, 4.946000099182, 4.944000244141, 5.139999866486, 4.871999740601, 4.868000030518, 4.656000137329, 4.456000328064, 4.487999916077, 4.003999710083, 3.636000156403, 4.421999931335, 3.906000137329, 4.355999946594, 4.354000091553, 4.319999694824, 3.710000038147, 5.109999656677, 4.28200006485, 4.512000083923, 4.640000343323, 4.753999710083, 4.725999832153, 5.130000114441, 5.031999588013, 5.926000118256, 5.78600025177, 5.498000144958, 5.203999996185]
]
},
"Infectious Vectors": {
"Units": "",
"Data": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.0001740947045619, 0.0007289958302863, 0.0007031112909317, 0.001617832109332, 0.001853412017226, 0.002468323102221, 0.003447709837928, 0.004246284719557, 0.005192629992962, 0.006973975338042, 0.009402283467352, 0.009967845864594, 0.009184481576085, 0.009432478807867, 0.0087890625, 0.009086320176721, 0.01251684967428, 0.00983405020088, 0.01046025101095, 0.008989886380732, 0.0088462959975, 0.009615384973586, 0.0103790089488, 0.008421302773058, 0.007506768219173, 0.005385207012296, 0.004952775780112, 0.00460246251896, 0.003529827110469, 0.003033366985619, 0.002673486014828, 0.002272999146953, 0.002212661318481, 0.001735250349157, 0.001520912512206, 0.001597908209078, 0.001199939986691, 0.001028013415635, 0.001028051134199, 0.0007794232224114, 0.0006648935959674, 0.0006714112823829, 0.0006141563062556, 0.0004560483503155, 0.0006515507120639, 0.0009238484781235, 0.0008697813027538, 0.001806358341128, 0.001775568234734, 0.002525832271203, 0.004391397349536, 0.004735128954053, 0.005472788121551, 0.006759656593204, 0.009646302089095, 0.007996719330549]
]
}
}
}