Index

A

acid-fast bacilli (AFB) smear active case finding (ACF) active tuberculosis disease agent-based model antibodies

antibody antigen antigens apoptosis ART asset collection

B

bacille Calmette-Guerin (BCG) vaccine

Boost boxcar function

C

campaign campaign event campaign file capsid cascade of care CD4 cells cell-mediated immunity channel circumsporozoite protein (CSP) class factory

Clausius-Clayperon relation cohort model coital dilution compartmental model configuration file contact investigation continuation phase core CRISPR cytokine

D

dashboard demographics file dendritic cell deterministic

diffusive migration directly observed treatment, short-course (DOTS) disability-adjusted life years (DALY) disease-specific build dynamic link library (DLL)

E

EMODule empiric treatment enhanced case finding (ECF) entomological inoculation rate (EIR) entry inhibitors epidemic Epidemiological MODeling software (EMOD) epitope

Eradication.exe ethambutol Euler method event coordinator exp( experiments exposed extrapulmonary TB

F

flattened file

force of infection (FoI)

G

gametocyte gametocytes gene drive mosquito glycoproteins

gonotrophic gp120 gp41 granuloma

H

helper T-cells hepatocyte herd immunity

Heterogeneous Intra-Node Transmission (HINT) high-performance computing (HPC) HIV coinfection homing endonuclease gene (HEG)

I

immune incidence individual mosquito model individual properties indoor residual spraying (IRS) infectious input files

insecticide-treated nets (ITN) inset chart integrase integrase inhibitors intensive phase intervention isoniazid

J

JSON (JavaScript Object Notation)

K

Keyhole Markup Language (KML)

Koppen-Geiger Climate Classification System

L

larval habitat larvicide latent tuberculosis infection (LTBI)

lentivirus Link-Time Code Generation (LTCG) loss to follow-up (LTFU) LTFU

M

mass drug administration (MDA) merozoite merozoite surface protein (MSP) merozoites Message Passing Interface (MPI) microsolver

monolithic build Monte Carlo method mother-to-child transmission (MTCT) multi-chart multidrug-resistant tuberculosis (MDR-TB) Mycobacterium tuberculosis

N

node node properties node-targeted intervention

nodes nonnucleoside reverse transcriptase inhibitors (NNRTIs) nucleoside reverse transcriptase inhibitors (NRTIs)

O

opportunistic infections ordinary differential equation (ODE)

output report overlay file oviposition

P

passive case finding (PCF) PEP Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) PMTCT pre-erythrocytic pre-erythrocytic vaccine (PEV) PrEP presymptomatic active TB prevalence

preview primary drug resistance primary TB infection protease protease inhibitors proteases pulmonary TB pyrazinamide pyroptosis

R

recovered regression test release reporter reproductive number

retrovirus reverse transcriptase ribonuclease rifampicin routine immunization (RI)

S

scenario schema schizont secondary drug resistance SEIR model SEIRS model serodifferent SI model simulation simulation burn-in simulation type SIR model SIRS model SIS model smear-negative TB smear-positive TB

solvers spatial repellent sporogony sporozoite sputum sputum culture Standard Template Library (STL) state transition event stochastic stochastic die-out subpatent sugar-baited trap suites superinfection supplemental immunization activity (SIA) susceptible

T

TB reactivation time step transmissibility (\beta)

transmission-blocking vaccine (TBV) tuberculin skin test tutorial

V

vaccine intervention types vector vector model vectorial capacity

vertical transmission viral load virion virulence

W

WAIFW matrix Weibull distribution Wolbachia

work item work order working directory