from emod_api import schema_to_class as s2c
from emod_api.interventions import utils
from . import utils as hiv_utils
from emodpy_hiv.interventions.utils import set_intervention_properties
from typing import List
[docs]def new_diagnostic(
camp,
Positive_Event,
Negative_Event,
abp_tvmap,
abt_tvmap,
abw_tvmap,
cua_tvmap,
cbt_tvmap,
cbw_tvmap,
intervention_name: str = None,
disqualifying_properties: List[str] = None,
new_property_value: str = None
):
"""
Wrapper function to create and return a HIVARTStagingCD4AgnosticDiagnostic intervention.
Args:
camp: emod_api.campaign object with schema_path set.
Returns:
ReadOnlyDict: Schema-based smart dictionary representing a new
"""
intervention = s2c.get_class_with_defaults( "HIVARTStagingCD4AgnosticDiagnostic", camp.schema_path )
intervention.Positive_Diagnosis_Event = camp.get_event( Positive_Event, True )
intervention.Negative_Diagnosis_Event = camp.get_event( Negative_Event, True )
hiv_utils.set_tvmap_lists_from_map( abp_tvmap, intervention.Adult_By_Pregnant )
hiv_utils.set_tvmap_lists_from_map( abt_tvmap, intervention.Adult_By_TB )
hiv_utils.set_tvmap_lists_from_map( abw_tvmap, intervention.Adult_By_WHO_Stage )
hiv_utils.set_tvmap_lists_from_map( cua_tvmap, intervention.Child_Treat_Under_Age_In_Years_Threshold )
hiv_utils.set_tvmap_lists_from_map( cbt_tvmap, intervention.Child_By_TB )
hiv_utils.set_tvmap_lists_from_map( cbw_tvmap, intervention.Child_By_WHO_Stage )
set_intervention_properties(intervention,
intervention_name=intervention_name,
disqualifying_properties=disqualifying_properties,
new_property_value=new_property_value)
return intervention
[docs]def new_intervention_event(
camp,
pos_event,
neg_event,
abp_tvmap,
abt_tvmap,
abw_tvmap,
cua_tvmap,
cbt_tvmap,
cbw_tvmap,
start_day=1,
coverage=1.0,
node_ids=None,
intervention_name: str = None,
disqualifying_properties: List[str] = None,
new_property_value: str = None
):
"""
Diagnostic as scheduled event.
"""
diag = new_diagnostic( camp, pos_event, neg_event, abp_tvmap, abt_tvmap, abw_tvmap, cua_tvmap, cbt_tvmap, cbw_tvmap,
intervention_name=intervention_name, disqualifying_properties=disqualifying_properties,
new_property_value=new_property_value)
# Coordinator
coordinator = s2c.get_class_with_defaults( "StandardEventCoordinator", camp.schema_path )
coordinator.Intervention_Config = diag
coordinator.Demographic_Coverage = coverage
# Event
event = s2c.get_class_with_defaults( "CampaignEvent", camp.schema_path )
event.Event_Coordinator_Config = coordinator
event.Start_Day = float(start_day)
event.Nodeset_Config = utils.do_nodes( camp.schema_path, node_ids )
hiv_utils.declutter( event )
return event
[docs]def new_intervention_as_file( camp, start_day, filename=None ):
import emod_api.campaign as camp
camp.add( new_intervention_event( camp, "HIVTestedPositive", "HIVTestedNegative", { 1972: 0.44 }, { 1972: 0.44 }, { 1972: 0.44 }, { 1972: 0.44 }, { 1972: 0.44 }, { 1972: 0.44 }, start_day =start_day ), first=True )
if filename is None:
filename = "HIVARTStagingCD4AgnosticDiagnostic.json"
camp.save( filename )
return filename