Source code for emodpy_hiv.interventions.artstagingbycd4diag

from emod_api import schema_to_class as s2c
from emod_api.interventions import utils
from . import utils as hiv_utils
from emodpy_hiv.interventions.utils import set_intervention_properties

from typing import List

[docs]def new_diagnostic( camp, Positive_Event, Negative_Event, Threshold_TVMap, IP_TVMap, IAT_TVMap, intervention_name: str = None, disqualifying_properties: List[str] = None, new_property_value: str = None ): """ Wrapper function to create and return a HIVARTStagingByCD4Diagnostic intervention. Args: camp: emod_api.campaign object with schema_path set. Returns: ReadOnlyDict: Schema-based smart dictionary representing a new """ intervention = s2c.get_class_with_defaults( "HIVARTStagingByCD4Diagnostic", camp.schema_path ) intervention.Positive_Diagnosis_Event = camp.get_send_trigger( Positive_Event, True ) intervention.Negative_Diagnosis_Event = camp.get_send_trigger( Negative_Event, True ) hiv_utils.set_tvmap_lists_from_map( IP_TVMap, intervention.If_Pregnant ) hiv_utils.set_tvmap_lists_from_map( IAT_TVMap, intervention.If_Active_TB ) hiv_utils.set_tvmap_lists_from_map( Threshold_TVMap, intervention.Threshold ) set_intervention_properties(intervention, intervention_name=intervention_name, disqualifying_properties=disqualifying_properties, new_property_value=new_property_value) return intervention
[docs]def new_intervention_event( camp, pos_event, neg_event, thresh_tvmap, pregnant_tvmap, tb_tvmap, start_day=1, coverage=1.0, node_ids=None, intervention_name: str = None, disqualifying_properties: List[str] = None, new_property_value: str = None ): """ Diagnostic as scheduled event. """ diag = new_diagnostic( camp, pos_event, neg_event, thresh_tvmap, pregnant_tvmap, tb_tvmap, intervention_name=intervention_name, disqualifying_properties=disqualifying_properties, new_property_value=new_property_value) # Coordinator coordinator = s2c.get_class_with_defaults( "StandardEventCoordinator", camp.schema_path ) coordinator.Intervention_Config = diag coordinator.Demographic_Coverage = coverage # Event event = s2c.get_class_with_defaults( "CampaignEvent", camp.schema_path ) event.Event_Coordinator_Config = coordinator event.Start_Day = float(start_day) event.Nodeset_Config = utils.do_nodes( camp.schema_path, node_ids ) from . import utils as hiv_utils hiv_utils.declutter( event ) return event
[docs]def new_intervention_as_file( camp, start_day, filename=None ): import emod_api.campaign as camp camp.add( new_intervention_event( camp, pos_event="HIVTestedPositive", neg_event="HIVTestedNegative", thresh_tvmap={}, pregnant_tvmap={}, tb_tvmap={}, start_day =start_day ), first=True ) if filename is None: filename = "HIVARTStagingByCD4Diagnostic.json" camp.save( filename ) return filename