Index

A

add_campaign_event() (in module emodpy_malaria.interventions.outbreak) add_community_health_worker() (in module emodpy_malaria.interventions.community_health_worker) add_diagnostic_survey() (in module emodpy_malaria.interventions.diag_survey) add_drug_campaign() (in module emodpy_malaria.interventions.drug_campaign) add_drug_resistance() (in module emodpy_malaria.malaria_config) add_drug_status_report() (in module emodpy_malaria.reporters.builtin) add_event_recorder() (in module emodpy_malaria.reporters.builtin) add_fMDA() (in module emodpy_malaria.interventions.drug_campaign) add_genes_and_alleles() (in module emodpy_malaria.vector_config) add_human_migration_tracking() (in module emodpy_malaria.reporters.builtin) add_InputEIR() (in module emodpy_malaria.interventions.inputeir) add_insecticide_resistance() (in module emodpy_malaria.malaria_config) (in module emodpy_malaria.vector_config) add_irs_housing_modification() (in module emodpy_malaria.interventions.irs) add_ITN() (in module emodpy_malaria.interventions.bednet) add_ITN_scheduled() (in module emodpy_malaria.interventions.bednet) add_ITN_triggered() (in module emodpy_malaria.interventions.bednet) add_larval_habitat_multiplier() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method) add_malaria_immunity_report() (in module emodpy_malaria.reporters.builtin) add_malaria_patient_json_report() (in module emodpy_malaria.reporters.builtin) add_malaria_sql_report() (in module emodpy_malaria.reporters.builtin) add_malaria_summary_report() (in module emodpy_malaria.reporters.builtin) add_malaria_survey_analyzer() (in module emodpy_malaria.reporters.builtin) add_malaria_transmission_report() (in module emodpy_malaria.reporters.builtin) add_MDA() (in module emodpy_malaria.interventions.drug_campaign) add_MSAT() (in module emodpy_malaria.interventions.drug_campaign)

add_mutation() (in module emodpy_malaria.vector_config) add_outbreak_individual() (in module emodpy_malaria.interventions.outbreak) add_outbreak_malaria_genetics() (in module emodpy_malaria.interventions.outbreak) add_outbreak_malaria_var_genes() (in module emodpy_malaria.interventions.outbreak) add_OutdoorRestKill() (in module emodpy_malaria.interventions.outdoorrestkill) add_report_event_counter() (in module emodpy_malaria.reporters.builtin) add_report_intervention_pop_avg() (in module emodpy_malaria.reporters.builtin) add_report_malaria_filtered() (in module emodpy_malaria.reporters.builtin) add_report_node_demographics() (in module emodpy_malaria.reporters.builtin) add_report_node_demographics_malaria() (in module emodpy_malaria.reporters.builtin) add_report_node_demographics_malaria_genetics() (in module emodpy_malaria.reporters.builtin) add_report_vector_genetics() (in module emodpy_malaria.reporters.builtin) add_report_vector_migration() (in module emodpy_malaria.reporters.builtin) add_report_vector_stats() (in module emodpy_malaria.reporters.builtin) add_report_vector_stats_malaria_genetics() (in module emodpy_malaria.reporters.builtin) add_rfMDA() (in module emodpy_malaria.interventions.drug_campaign) add_rfMSAT() (in module emodpy_malaria.interventions.drug_campaign) add_scheduled_vaccine() (in module emodpy_malaria.interventions.vaccine) add_spatial_report_malaria_filtered() (in module emodpy_malaria.reporters.builtin) add_species() (in module emodpy_malaria.malaria_config) (in module emodpy_malaria.vector_config) add_species_drivers() (in module emodpy_malaria.vector_config) add_trait() (in module emodpy_malaria.vector_config) add_treatment_seeking() (in module emodpy_malaria.interventions.treatment_seeking) add_vector_habitat_report() (in module emodpy_malaria.reporters.builtin) AntimalarialDrug() (in module emodpy_malaria.interventions.common) (in module emodpy_malaria.interventions.drug)

B

BasicBednet() (in module emodpy_malaria.interventions.bednet)

Bednet() (in module emodpy_malaria.interventions.bednet) BednetIntervention() (in module emodpy_malaria.interventions.bednet)

C

config() (emodpy_malaria.reporters.builtin.MalariaImmunityReport method) (emodpy_malaria.reporters.builtin.MalariaPatientJSONReport method) (emodpy_malaria.reporters.builtin.MalariaSqlReport method) (emodpy_malaria.reporters.builtin.MalariaSummaryReport method) (emodpy_malaria.reporters.builtin.MalariaSurveyJSONAnalyzer method) (emodpy_malaria.reporters.builtin.ReportDrugStatus method) (emodpy_malaria.reporters.builtin.ReportEventCounter method) (emodpy_malaria.reporters.builtin.ReportHumanMigrationTracking method) (emodpy_malaria.reporters.builtin.ReportInterventionPopAvg method) (emodpy_malaria.reporters.builtin.ReportMalariaFiltered method) (emodpy_malaria.reporters.builtin.ReportNodeDemographics method) (emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalaria method) (emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalariaGenetics method) (emodpy_malaria.reporters.builtin.ReportSimpleMalariaTransmissionJSON method) (emodpy_malaria.reporters.builtin.ReportVectorGenetics method) (emodpy_malaria.reporters.builtin.ReportVectorMigration method) (emodpy_malaria.reporters.builtin.ReportVectorStats method) (emodpy_malaria.reporters.builtin.ReportVectorStatsMalariaGenetics method) (emodpy_malaria.reporters.builtin.SpatialReportMalariaFiltered method) (emodpy_malaria.reporters.builtin.VectorHabitatReport method)

D

drug_configs_from_code() (in module emodpy_malaria.interventions.drug_campaign)

E

emodpy_malaria module emodpy_malaria.demographics module emodpy_malaria.demographics.MalariaDemographics module emodpy_malaria.interventions module emodpy_malaria.interventions.bednet module emodpy_malaria.interventions.common module emodpy_malaria.interventions.community_health_worker module emodpy_malaria.interventions.diag_survey module emodpy_malaria.interventions.drug module emodpy_malaria.interventions.drug_campaign module emodpy_malaria.interventions.inputeir module emodpy_malaria.interventions.irs module emodpy_malaria.interventions.ivermectin module

emodpy_malaria.interventions.mosquitorelease module emodpy_malaria.interventions.outbreak module emodpy_malaria.interventions.outdoorrestkill module emodpy_malaria.interventions.spacespraying module emodpy_malaria.interventions.sugartrap module emodpy_malaria.interventions.treatment_seeking module emodpy_malaria.interventions.udbednet module emodpy_malaria.interventions.vaccine module emodpy_malaria.malaria_config module emodpy_malaria.malaria_vector_species_params module emodpy_malaria.reporters module emodpy_malaria.reporters.builtin module emodpy_malaria.vector_config module

F

fmda_cfg() (in module emodpy_malaria.interventions.drug_campaign) from_csv() (in module emodpy_malaria.demographics.MalariaDemographics)

from_params() (in module emodpy_malaria.demographics.MalariaDemographics) from_pop_csv() (in module emodpy_malaria.demographics.MalariaDemographics) from_template_node() (in module emodpy_malaria.demographics.MalariaDemographics)

G

get_drug_params() (in module emodpy_malaria.malaria_config) get_file_from_http() (in module emodpy_malaria.malaria_config)

get_species_params() (in module emodpy_malaria.malaria_config) (in module emodpy_malaria.vector_config)

I

InputEIR() (in module emodpy_malaria.interventions.inputeir)

Ivermectin() (in module emodpy_malaria.interventions.ivermectin)

M

MalariaDemographics (class in emodpy_malaria.demographics.MalariaDemographics) MalariaDiagnostic() (in module emodpy_malaria.interventions.common) MalariaImmunityReport (class in emodpy_malaria.reporters.builtin) MalariaPatientJSONReport (class in emodpy_malaria.reporters.builtin) MalariaSqlReport (class in emodpy_malaria.reporters.builtin) MalariaSummaryReport (class in emodpy_malaria.reporters.builtin) MalariaSurveyJSONAnalyzer (class in emodpy_malaria.reporters.builtin) module emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.interventions.vaccine emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.vector_config

MosquitoRelease() (in module emodpy_malaria.interventions.mosquitorelease)

N

new_intervention() (in module emodpy_malaria.interventions.inputeir) new_intervention_as_file() (in module emodpy_malaria.interventions.bednet) (in module emodpy_malaria.interventions.drug) (in module emodpy_malaria.interventions.inputeir) (in module emodpy_malaria.interventions.irs) (in module emodpy_malaria.interventions.mosquitorelease) (in module emodpy_malaria.interventions.spacespraying) (in module emodpy_malaria.interventions.sugartrap) (in module emodpy_malaria.interventions.udbednet) (in module emodpy_malaria.interventions.vaccine)

P

parameters (emodpy_malaria.reporters.builtin.MalariaImmunityReport attribute) (emodpy_malaria.reporters.builtin.MalariaPatientJSONReport attribute) (emodpy_malaria.reporters.builtin.MalariaSqlReport attribute) (emodpy_malaria.reporters.builtin.MalariaSummaryReport attribute) (emodpy_malaria.reporters.builtin.MalariaSurveyJSONAnalyzer attribute) (emodpy_malaria.reporters.builtin.ReportDrugStatus attribute) (emodpy_malaria.reporters.builtin.ReportEventCounter attribute) (emodpy_malaria.reporters.builtin.ReportHumanMigrationTracking attribute) (emodpy_malaria.reporters.builtin.ReportInterventionPopAvg attribute) (emodpy_malaria.reporters.builtin.ReportMalariaFiltered attribute) (emodpy_malaria.reporters.builtin.ReportNodeDemographics attribute) (emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalaria attribute) (emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalariaGenetics attribute) (emodpy_malaria.reporters.builtin.ReportSimpleMalariaTransmissionJSON attribute) (emodpy_malaria.reporters.builtin.ReportVectorGenetics attribute) (emodpy_malaria.reporters.builtin.ReportVectorMigration attribute) (emodpy_malaria.reporters.builtin.ReportVectorStats attribute) (emodpy_malaria.reporters.builtin.ReportVectorStatsMalariaGenetics attribute) (emodpy_malaria.reporters.builtin.SpatialReportMalariaFiltered attribute) (emodpy_malaria.reporters.builtin.VectorHabitatReport attribute)

R

ReportDrugStatus (class in emodpy_malaria.reporters.builtin) ReportEventCounter (class in emodpy_malaria.reporters.builtin) ReportHumanMigrationTracking (class in emodpy_malaria.reporters.builtin) ReportInterventionPopAvg (class in emodpy_malaria.reporters.builtin) ReportMalariaFiltered (class in emodpy_malaria.reporters.builtin) ReportNodeDemographics (class in emodpy_malaria.reporters.builtin)

ReportNodeDemographicsMalaria (class in emodpy_malaria.reporters.builtin) ReportNodeDemographicsMalariaGenetics (class in emodpy_malaria.reporters.builtin) ReportSimpleMalariaTransmissionJSON (class in emodpy_malaria.reporters.builtin) ReportVectorGenetics (class in emodpy_malaria.reporters.builtin) ReportVectorMigration (class in emodpy_malaria.reporters.builtin) ReportVectorStats (class in emodpy_malaria.reporters.builtin) ReportVectorStatsMalariaGenetics (class in emodpy_malaria.reporters.builtin)

S

set_drug_param() (in module emodpy_malaria.malaria_config) set_max_larval_capacity() (in module emodpy_malaria.malaria_config) (in module emodpy_malaria.vector_config) set_parasite_genetics_params() (in module emodpy_malaria.malaria_config) set_risk_high() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method) set_risk_lowmedium() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method) set_species_param() (in module emodpy_malaria.malaria_config) (in module emodpy_malaria.vector_config)

set_team_defaults() (in module emodpy_malaria.malaria_config) (in module emodpy_malaria.vector_config) set_team_drug_params() (in module emodpy_malaria.malaria_config) SpaceSpraying() (in module emodpy_malaria.interventions.spacespraying) SpatialReportMalariaFiltered (class in emodpy_malaria.reporters.builtin) species_params() (in module emodpy_malaria.malaria_vector_species_params) SugarTrap() (in module emodpy_malaria.interventions.sugartrap)

T

triggered_campaign_delay_event() (in module emodpy_malaria.interventions.common)

U

UDBednet() (in module emodpy_malaria.interventions.udbednet)

V

VectorHabitatReport (class in emodpy_malaria.reporters.builtin)