emodpy-malaria
v2.0.2
Installation prerequisites
API reference
Frequently asked questions
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Index
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B
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C
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D
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E
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F
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G
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I
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M
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N
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P
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R
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V
A
add_campaign_event() (in module emodpy_malaria.interventions.common)
(in module emodpy_malaria.interventions.outbreak)
add_community_health_worker() (in module emodpy_malaria.interventions.community_health_worker)
add_diagnostic_survey() (in module emodpy_malaria.interventions.diag_survey)
add_drug_campaign() (in module emodpy_malaria.interventions.drug_campaign)
add_drug_resistance() (in module emodpy_malaria.malaria_config)
add_drug_status_report() (in module emodpy_malaria.reporters.builtin)
add_event_recorder() (in module emodpy_malaria.reporters.builtin)
add_fMDA() (in module emodpy_malaria.interventions.drug_campaign)
add_genes_and_alleles() (in module emodpy_malaria.vector_config)
add_habitat_reduction_event() (in module emodpy_malaria.interventions.scale_larval_habitats)
add_human_migration_tracking() (in module emodpy_malaria.reporters.builtin)
add_initial_vectors_per_species() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
add_initial_vectors_per_species_from_csv() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
add_InputEIR() (in module emodpy_malaria.interventions.inputeir)
add_insecticide_resistance() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
add_ITN() (in module emodpy_malaria.interventions.bednet)
add_ITN_scheduled() (in module emodpy_malaria.interventions.bednet)
add_ITN_triggered() (in module emodpy_malaria.interventions.bednet)
add_larval_habitat_multiplier() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
add_larvicide() (in module emodpy_malaria.interventions.larvicide)
add_malaria_immunity_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_patient_json_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_sql_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_summary_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_survey_analyzer() (in module emodpy_malaria.reporters.builtin)
add_malaria_transmission_report() (in module emodpy_malaria.reporters.builtin)
add_MDA() (in module emodpy_malaria.interventions.drug_campaign)
add_MSAT() (in module emodpy_malaria.interventions.drug_campaign)
add_mutation() (in module emodpy_malaria.vector_config)
add_outbreak_individual() (in module emodpy_malaria.interventions.outbreak)
add_outbreak_malaria_genetics() (in module emodpy_malaria.interventions.outbreak)
add_outbreak_malaria_var_genes() (in module emodpy_malaria.interventions.outbreak)
add_OutdoorRestKill() (in module emodpy_malaria.interventions.outdoorrestkill)
add_report_event_counter() (in module emodpy_malaria.reporters.builtin)
add_report_intervention_pop_avg() (in module emodpy_malaria.reporters.builtin)
add_report_malaria_filtered() (in module emodpy_malaria.reporters.builtin)
add_report_node_demographics() (in module emodpy_malaria.reporters.builtin)
add_report_node_demographics_malaria() (in module emodpy_malaria.reporters.builtin)
add_report_node_demographics_malaria_genetics() (in module emodpy_malaria.reporters.builtin)
add_report_vector_genetics() (in module emodpy_malaria.reporters.builtin)
add_report_vector_migration() (in module emodpy_malaria.reporters.builtin)
add_report_vector_stats() (in module emodpy_malaria.reporters.builtin)
add_report_vector_stats_malaria_genetics() (in module emodpy_malaria.reporters.builtin)
add_rfMDA() (in module emodpy_malaria.interventions.drug_campaign)
add_rfMSAT() (in module emodpy_malaria.interventions.drug_campaign)
add_scale_larval_habitats() (in module emodpy_malaria.interventions.scale_larval_habitats)
add_scheduled_irs_housing_modification() (in module emodpy_malaria.interventions.irs)
add_scheduled_ivermectin() (in module emodpy_malaria.interventions.ivermectin)
add_scheduled_usage_dependent_bednet() (in module emodpy_malaria.interventions.usage_dependent_bednet)
add_scheduled_vaccine() (in module emodpy_malaria.interventions.vaccine)
add_spatial_report_malaria_filtered() (in module emodpy_malaria.reporters.builtin)
add_species() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
add_species_drivers() (in module emodpy_malaria.vector_config)
add_trait() (in module emodpy_malaria.vector_config)
add_treatment_seeking() (in module emodpy_malaria.interventions.treatment_seeking)
add_triggered_campaign_delay_event() (in module emodpy_malaria.interventions.common)
add_triggered_irs_housing_modification() (in module emodpy_malaria.interventions.irs)
add_triggered_ivermectin() (in module emodpy_malaria.interventions.ivermectin)
add_triggered_usage_dependent_bednet() (in module emodpy_malaria.interventions.usage_dependent_bednet)
add_triggered_vaccine() (in module emodpy_malaria.interventions.vaccine)
add_vector_habitat_report() (in module emodpy_malaria.reporters.builtin)
adherent_drug() (in module emodpy_malaria.interventions.adherentdrug)
AntimalarialDrug() (in module emodpy_malaria.interventions.common)
(in module emodpy_malaria.interventions.drug)
B
BasicBednet() (in module emodpy_malaria.interventions.bednet)
Bednet() (in module emodpy_malaria.interventions.bednet)
BednetIntervention() (in module emodpy_malaria.interventions.bednet)
C
config() (emodpy_malaria.reporters.builtin.MalariaImmunityReport method)
(emodpy_malaria.reporters.builtin.MalariaPatientJSONReport method)
(emodpy_malaria.reporters.builtin.MalariaSqlReport method)
(emodpy_malaria.reporters.builtin.MalariaSummaryReport method)
(emodpy_malaria.reporters.builtin.MalariaSurveyJSONAnalyzer method)
(emodpy_malaria.reporters.builtin.ReportDrugStatus method)
(emodpy_malaria.reporters.builtin.ReportEventCounter method)
(emodpy_malaria.reporters.builtin.ReportHumanMigrationTracking method)
(emodpy_malaria.reporters.builtin.ReportInterventionPopAvg method)
(emodpy_malaria.reporters.builtin.ReportMalariaFiltered method)
(emodpy_malaria.reporters.builtin.ReportNodeDemographics method)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalaria method)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalariaGenetics method)
(emodpy_malaria.reporters.builtin.ReportSimpleMalariaTransmissionJSON method)
(emodpy_malaria.reporters.builtin.ReportVectorGenetics method)
(emodpy_malaria.reporters.builtin.ReportVectorMigration method)
(emodpy_malaria.reporters.builtin.ReportVectorStats method)
(emodpy_malaria.reporters.builtin.ReportVectorStatsMalariaGenetics method)
(emodpy_malaria.reporters.builtin.SpatialReportMalariaFiltered method)
(emodpy_malaria.reporters.builtin.VectorHabitatReport method)
D
drug_configs_from_code() (in module emodpy_malaria.interventions.drug_campaign)
E
emodpy_malaria
module
emodpy_malaria.demographics
module
emodpy_malaria.demographics.MalariaDemographics
module
emodpy_malaria.interventions
module
emodpy_malaria.interventions.adherentdrug
module
emodpy_malaria.interventions.bednet
module
emodpy_malaria.interventions.common
module
emodpy_malaria.interventions.community_health_worker
module
emodpy_malaria.interventions.diag_survey
module
emodpy_malaria.interventions.drug
module
emodpy_malaria.interventions.drug_campaign
module
emodpy_malaria.interventions.inputeir
module
emodpy_malaria.interventions.irs
module
emodpy_malaria.interventions.ivermectin
module
emodpy_malaria.interventions.larvicide
module
emodpy_malaria.interventions.mosquitorelease
module
emodpy_malaria.interventions.outbreak
module
emodpy_malaria.interventions.outdoorrestkill
module
emodpy_malaria.interventions.scale_larval_habitats
module
emodpy_malaria.interventions.spacespraying
module
emodpy_malaria.interventions.sugartrap
module
emodpy_malaria.interventions.treatment_seeking
module
emodpy_malaria.interventions.usage_dependent_bednet
module
emodpy_malaria.interventions.vaccine
module
emodpy_malaria.malaria_config
module
emodpy_malaria.malaria_vector_species_params
module
emodpy_malaria.reporters
module
emodpy_malaria.reporters.builtin
module
emodpy_malaria.vector_config
module
F
fmda_cfg() (in module emodpy_malaria.interventions.drug_campaign)
from_csv() (in module emodpy_malaria.demographics.MalariaDemographics)
from_params() (in module emodpy_malaria.demographics.MalariaDemographics)
from_pop_csv() (in module emodpy_malaria.demographics.MalariaDemographics)
from_template_node() (in module emodpy_malaria.demographics.MalariaDemographics)
G
get_drug_params() (in module emodpy_malaria.malaria_config)
get_file_from_http() (in module emodpy_malaria.malaria_config)
get_species_params() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
I
InputEIR() (in module emodpy_malaria.interventions.inputeir)
irs_configuration() (in module emodpy_malaria.interventions.irs)
M
malaria_diagnostic() (in module emodpy_malaria.interventions.common)
MalariaDemographics (class in emodpy_malaria.demographics.MalariaDemographics)
MalariaDiagnostic() (in module emodpy_malaria.interventions.common)
MalariaImmunityReport (class in emodpy_malaria.reporters.builtin)
MalariaPatientJSONReport (class in emodpy_malaria.reporters.builtin)
MalariaSqlReport (class in emodpy_malaria.reporters.builtin)
MalariaSummaryReport (class in emodpy_malaria.reporters.builtin)
MalariaSurveyJSONAnalyzer (class in emodpy_malaria.reporters.builtin)
module
emodpy_malaria
emodpy_malaria.demographics
emodpy_malaria.demographics.MalariaDemographics
emodpy_malaria.interventions
emodpy_malaria.interventions.adherentdrug
emodpy_malaria.interventions.bednet
emodpy_malaria.interventions.common
emodpy_malaria.interventions.community_health_worker
emodpy_malaria.interventions.diag_survey
emodpy_malaria.interventions.drug
emodpy_malaria.interventions.drug_campaign
emodpy_malaria.interventions.inputeir
emodpy_malaria.interventions.irs
emodpy_malaria.interventions.ivermectin
emodpy_malaria.interventions.larvicide
emodpy_malaria.interventions.mosquitorelease
emodpy_malaria.interventions.outbreak
emodpy_malaria.interventions.outdoorrestkill
emodpy_malaria.interventions.scale_larval_habitats
emodpy_malaria.interventions.spacespraying
emodpy_malaria.interventions.sugartrap
emodpy_malaria.interventions.treatment_seeking
emodpy_malaria.interventions.usage_dependent_bednet
emodpy_malaria.interventions.vaccine
emodpy_malaria.malaria_config
emodpy_malaria.malaria_vector_species_params
emodpy_malaria.reporters
emodpy_malaria.reporters.builtin
emodpy_malaria.vector_config
MosquitoRelease() (in module emodpy_malaria.interventions.mosquitorelease)
N
new_intervention() (in module emodpy_malaria.interventions.inputeir)
new_intervention_as_file() (in module emodpy_malaria.interventions.bednet)
(in module emodpy_malaria.interventions.drug)
(in module emodpy_malaria.interventions.inputeir)
(in module emodpy_malaria.interventions.irs)
(in module emodpy_malaria.interventions.larvicide)
(in module emodpy_malaria.interventions.mosquitorelease)
(in module emodpy_malaria.interventions.spacespraying)
(in module emodpy_malaria.interventions.sugartrap)
(in module emodpy_malaria.interventions.usage_dependent_bednet)
(in module emodpy_malaria.interventions.vaccine)
P
parameters (emodpy_malaria.reporters.builtin.MalariaImmunityReport attribute)
(emodpy_malaria.reporters.builtin.MalariaPatientJSONReport attribute)
(emodpy_malaria.reporters.builtin.MalariaSqlReport attribute)
(emodpy_malaria.reporters.builtin.MalariaSummaryReport attribute)
(emodpy_malaria.reporters.builtin.MalariaSurveyJSONAnalyzer attribute)
(emodpy_malaria.reporters.builtin.ReportDrugStatus attribute)
(emodpy_malaria.reporters.builtin.ReportEventCounter attribute)
(emodpy_malaria.reporters.builtin.ReportHumanMigrationTracking attribute)
(emodpy_malaria.reporters.builtin.ReportInterventionPopAvg attribute)
(emodpy_malaria.reporters.builtin.ReportMalariaFiltered attribute)
(emodpy_malaria.reporters.builtin.ReportNodeDemographics attribute)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalaria attribute)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalariaGenetics attribute)
(emodpy_malaria.reporters.builtin.ReportSimpleMalariaTransmissionJSON attribute)
(emodpy_malaria.reporters.builtin.ReportVectorGenetics attribute)
(emodpy_malaria.reporters.builtin.ReportVectorMigration attribute)
(emodpy_malaria.reporters.builtin.ReportVectorStats attribute)
(emodpy_malaria.reporters.builtin.ReportVectorStatsMalariaGenetics attribute)
(emodpy_malaria.reporters.builtin.SpatialReportMalariaFiltered attribute)
(emodpy_malaria.reporters.builtin.VectorHabitatReport attribute)
R
ReportDrugStatus (class in emodpy_malaria.reporters.builtin)
ReportEventCounter (class in emodpy_malaria.reporters.builtin)
ReportHumanMigrationTracking (class in emodpy_malaria.reporters.builtin)
ReportInterventionPopAvg (class in emodpy_malaria.reporters.builtin)
ReportMalariaFiltered (class in emodpy_malaria.reporters.builtin)
ReportNodeDemographics (class in emodpy_malaria.reporters.builtin)
ReportNodeDemographicsMalaria (class in emodpy_malaria.reporters.builtin)
ReportNodeDemographicsMalariaGenetics (class in emodpy_malaria.reporters.builtin)
ReportSimpleMalariaTransmissionJSON (class in emodpy_malaria.reporters.builtin)
ReportVectorGenetics (class in emodpy_malaria.reporters.builtin)
ReportVectorMigration (class in emodpy_malaria.reporters.builtin)
ReportVectorStats (class in emodpy_malaria.reporters.builtin)
ReportVectorStatsMalariaGenetics (class in emodpy_malaria.reporters.builtin)
S
set_drug_param() (in module emodpy_malaria.malaria_config)
set_max_larval_capacity() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
set_parasite_genetics_params() (in module emodpy_malaria.malaria_config)
set_risk_high() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
set_risk_lowmedium() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
set_species_param() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
set_team_defaults() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
set_team_drug_params() (in module emodpy_malaria.malaria_config)
SpaceSpraying() (in module emodpy_malaria.interventions.spacespraying)
SpatialReportMalariaFiltered (class in emodpy_malaria.reporters.builtin)
species_params() (in module emodpy_malaria.malaria_vector_species_params)
SugarTrap() (in module emodpy_malaria.interventions.sugartrap)
V
VectorHabitatReport (class in emodpy_malaria.reporters.builtin)
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