Source code for emodpy_tbhiv.interventions.resist_diag

from emod_api import schema_to_class as s2c
import emod_api.interventions.common as common
import emod_api.interventions.utils as utils
from emodpy_tbhiv.interventions import purge_campaign_event

#dupe_policy = "Replace" # or "Add" or "Abort" -- from covid branch

def ResistanceDiagnostic(
        camp,
        trigger_treatment_list,
        sensitivity=1.0,
        specificity=1.0,
        pos_event= 'TBMDRTestPositive',
        neg_event= 'TBMDRTestNegative',
        def_event= 'TBMDRTestDefault',
        treatment_fraction= 1,
        treatment_fraction_negative_test=1,
        start_day=1,
        duration=-1,
        property_restrictions_list=[],
        nodeIDs=[],
        cost=0,
        black_period=0,
        black_trigger='Blackout',
        event_name='TB Diagnosis MDR'):
    """
    Create and return triggered campaign event that issues an ResistanceDiagnostic intervention.

    Args:

        camp: The :py:obj:`emod_api:emod_api.campaign` module instance which serves as the campaign accumulator.
        trigger_treatment_list: List of 1 or more triggers (or events or signals) which are listened to and trigger the distribution of the intervention. There is no default. 

        sensitivity: Sensitivity. Defaults to 1.0.
        specificity: Specificity. Defaults to 1.0.
        pos_event: Signal (or trigger) which is broadcast if the test is positive. Defaults to 'TBMDRTestPositive'.
        neg_event: Signal (or trigger) which is broadcast if the test is negative. Defaults to 'TBMDRTestNegative'.
        def_event: Signal (or trigger) which is broadcast if the test is default. Defaults to 'TBMDRTestDefault'.
        treatment_fraction: Fraction of population testing positive you get the positive result effect. Defaults to 1.
        treatment_fraction_negative_test: ... Defaults to 1.

        start_day: The timestep when this campaign event takes effect. Defaults to 1.
        duration: How long the campaign event remains in effect. Defaults to forever.
        property_restrictions_list: Optiional list of Individual Properties to limit the intervention to.
        nodeIDs: Optiona list of node ids to target. Defaults to all.
        cost: Per unit 'price' of each intervention.
        black_period: Undocumented.
        black_trigger: Undocumented.
        event_name: Undocumented.

    Returns:

        New campaign event that can be added to the campaign.

    """
    schema_path = camp.schema_path
    
    intervention = s2c.get_class_with_defaults( "MDRDiagnostic", schema_path )
    intervention.Base_Sensitivity = sensitivity
    intervention.Base_Specificity = specificity
    intervention.Treatment_Fraction = treatment_fraction
    intervention.Treatment_Fraction_Negative_Diagnosis = treatment_fraction_negative_test
    intervention.Event_Or_Config = 'Event' # should not be needed
    intervention.Positive_Diagnosis_Event = camp.get_send_trigger( pos_event )
    intervention.Negative_Diagnosis_Event = camp.get_send_trigger( neg_event )
    intervention.Defaulters_Event = camp.get_send_trigger( def_event )
    intervention.Cost_To_Consumer = cost

    event = common.TriggeredCampaignEvent( camp, start_day,event_name, trigger_treatment_list, [ intervention ], Node_Ids=nodeIDs, Duration=duration, Property_Restrictions=property_restrictions_list )
    purge_campaign_event( event )
    return event

def new_intervention_as_file( camp, filename="resist_diag.json" ):
    camp.add( ResistanceDiagnostic( camp, trigger_treatment_list=[ "Births" ] ) )
    camp.save( filename )
    return filename