Family planning model and analyses

This repository contains the code for both the family planning model, FPsim, as well as the analysis scripts for performing analyses.

  • FPsim, in the folder fpsim, is a standalone Python library for performing family planning analyses.

  • Scripts that use FPsim to run analyses are in the fp_analyses folder.

  • FPsim tests are in the tests folder.

  • Most other folders are preserved for archival purposes and may be deleted.

  • This repository is currently under development. Eventually, FPsim and fp_analyses will be split into a separate repositories.

Installation

Run pip install -e . to install these packages and their required dependencies. This will make both fpsim and fp_analyses available on the Python path.

Documentation

Documentation is available at https://docs.idmod.org/projects/fpsim/en/latest/.

Contributing

Style guide

Please follow the starsim style guide at: https://github.com/amath-idm/styleguide

Issues

  • Everything you’re working on must be linked to an issue. If you notice that something needs to be done (even small things or things nearly finished) and there isn’t an issue for it, create an issue. This helps track who is doing what and why.

  • Label issues you are currently working on with in progress for tracking purposes - and to avoid accidental replication of work.

  • High priority issues are organized from top (most urgent) to bottom (least urgent) and can be labelled with urgent or blocking as appropriate. If you are working on something that is urgent or blocks other development, please set a reasonable deadline for review (can be updated, of course!)

  • The Hydra Head Effect: Often when you solve one issue, two more pop up in its place. When this happens, close the original issue and start new issues (linked) to be triaged.

  • If your issue has more than two distinct tasks associated with it, please include a check list in the text, so that we can track which components of the issue have been resolved and which need to be supported.

  • If your issue is a bug that was not caught by test, and includes a specific expected value that can be hard-checked, please either include or request a test patch so that a test fails due to the bug

Pull Requests

  • ALL PRs should be linked to at least one issue. As above, if you’re working on a PR and there’s no issue associated with it, you can create an issue. However, before doing so, ask yourself if it really needs to be done.

  • All PRs should have another person assigned for review. If assigned to more than one person, use the comment section to assign an issue owner/main reviewer. Use your best judgement here, as roles shift, but in general:

    • @MOBrien-IDM as FPsim lead (approval required to merge)

    • Anyone you’ve worked with on this issue 1:1

    • @cliffckerr to ensure new feature performance and compatibility with FPsim

    • @mzimmermann-IDM for subject matter expertise, economic and empowerment questions, questions about modeling best practices

    • @avictorious for questions about historical FPsim decisions and subject matter expertise

    • @SBuxton-IDM for embedded engineer support, public repo tasks, and testing

  • Keep PRs as small as possible: e.g., one issue, one PR. Small PRs are easier to review and merge.

  • At times there may be a backlog of issues, but there should never be a big backlog of PRs. (If you’re unsure whether to make a PR, write a detailed issue first.)

    • What if there are two people working on PRs at the same time?

    • Take a look at the issue priority. The PR addressing the higher priority issue should merge first. Make sure you pull the new master after that merge before you push changes for your PR. If both issues are high priority, the one with more time-sensitive commits should be merged first. If you’re unsure, ask.

  • If we do have a backlog of PRs, it’s fine to make a new branch off your current PR, and make a new PR from that. These “cumulative PRs are not ideal, but they are better than creating merge conflicts with yourself!

  • Before starting work, always ensure you’ve pulled from master. If you spend more than a few days on your PR, make sure you pull from master regularly. Before making a PR, ensure that your branch is up to date with master.

  • Please create a draft PR on an active branch as soon as you’re ready. Be generous in creating draft PRs. It helps with transparency and allows for quicker support if you run into a problem.

  • Make sure tests pass on your PR. If they don’t, mark the PR as draft until they do.

  • Even if your work isn’t ready for a PR, push it regularly. A guiding principle is to commit every few minutes and push to your branch every 1-2 hours.

  • Every PR that adds a new feature or new functionality which can be hard-checked (so, excluding plotting functionality etc.) should include a corresponding unittest

Testing

  • Every time a new feature is added, the developer should develop a unittest which checks the basic implementation of the feature

  • A unittest is simply a function starting with “test” that implements a feature as succinctly as possibly, and checks the expected output with an assertion

  • If you’re having trouble starting a unittest feel free to look at some examples here

  • Some test suites organize the tests into a class with a configuration function called setUp(). After implementing a unittest in such a class you may want to take advantage of the shared assets defined in setUp() to minimize the number of lines of code in your test.

  • The new unittest should follow style guidelines laid out in the starsim style guide

  • The new test should contain a docstring that details what is being tested, how it is tested (what it’s being checked against), and the expected value

  • The test should display error message information that is sufficient to create a bug report (summary, expected value, and actual value)