Index

_

__call__() (laser_cholera.metapop.HumanToHuman method) (laser_cholera.metapop.humantohuman.HumanToHuman method) (laser_cholera.metapop.HumanToHumanVax method) (laser_cholera.metapop.humantohumanvax.HumanToHumanVax method)

__str__() (laser_cholera.metapop.params.PropertySetEx method)

A

Analyzer (class in laser_cholera.metapop) (class in laser_cholera.metapop.analyzer)

C

calc_log_likelihood() (in module laser_cholera.likelihood) calc_log_likelihood_beta() (in module laser_cholera.likelihood) calc_log_likelihood_binomial() (in module laser_cholera.likelihood) calc_log_likelihood_gamma() (in module laser_cholera.likelihood) calc_log_likelihood_negbin() (in module laser_cholera.likelihood) calc_log_likelihood_normal() (in module laser_cholera.likelihood) calc_log_likelihood_poisson() (in module laser_cholera.likelihood) calc_log_likelihood_validation() (in module laser_cholera.likelihood) Census (class in laser_cholera.metapop) (class in laser_cholera.metapop.census) check() (laser_cholera.metapop.Analyzer method) (laser_cholera.metapop.analyzer.Analyzer method) (laser_cholera.metapop.Census method) (laser_cholera.metapop.census.Census method) (laser_cholera.metapop.DerivedValues method) (laser_cholera.metapop.derivedvalues.DerivedValues method) (laser_cholera.metapop.Environmental method) (laser_cholera.metapop.environmental.Environmental method) (laser_cholera.metapop.EnvToHuman method) (laser_cholera.metapop.envtohuman.EnvToHuman method) (laser_cholera.metapop.EnvToHumanVax method) (laser_cholera.metapop.envtohumanvax.EnvToHumanVax method) (laser_cholera.metapop.Exposed method) (laser_cholera.metapop.exposed.Exposed method) (laser_cholera.metapop.HumanToHuman method) (laser_cholera.metapop.humantohuman.HumanToHuman method) (laser_cholera.metapop.HumanToHumanVax method) (laser_cholera.metapop.humantohumanvax.HumanToHumanVax method) (laser_cholera.metapop.Infectious method) (laser_cholera.metapop.infectious.Infectious method) (laser_cholera.metapop.Parameters method) (laser_cholera.metapop.params.Parameters method) (laser_cholera.metapop.Recorder method) (laser_cholera.metapop.recorder.Recorder method) (laser_cholera.metapop.Recovered method) (laser_cholera.metapop.recovered.Recovered method) (laser_cholera.metapop.Susceptible method) (laser_cholera.metapop.susceptible.Susceptible method) (laser_cholera.metapop.Vaccinated method) (laser_cholera.metapop.vaccinated.Vaccinated method) (laser_cholera.test.Eradication method)

color() (in module laser_cholera.sc) Component (class in laser_cholera.metapop.susceptible) components (laser_cholera.metapop.model.Model property) compute() (in module laser_cholera) (in module laser_cholera.core)

D

default() (laser_cholera.metapop.params.PseEncoder method) DerivedValues (class in laser_cholera.metapop) (class in laser_cholera.metapop.derivedvalues)

dict_to_propertysetex() (in module laser_cholera.metapop.params)

E

Environmental (class in laser_cholera.metapop) (class in laser_cholera.metapop.environmental) EnvToHuman (class in laser_cholera.metapop) (class in laser_cholera.metapop.envtohuman)

EnvToHumanVax (class in laser_cholera.metapop) (class in laser_cholera.metapop.envtohumanvax) Eradication (class in laser_cholera.test) Exposed (class in laser_cholera.metapop) (class in laser_cholera.metapop.exposed)

F

fourier_series_double() (in module laser_cholera.metapop.utils)

G

get_daily_seasonality() (in module laser_cholera.metapop.utils) get_model_likelihood() (in module laser_cholera.likelihood)

get_parameters() (in module laser_cholera.metapop) (in module laser_cholera.metapop.params) get_pi_from_lat_long() (in module laser_cholera.metapop.utils)

H

HumanToHuman (class in laser_cholera.metapop) (class in laser_cholera.metapop.humantohuman)

HumanToHumanVax (class in laser_cholera.metapop) (class in laser_cholera.metapop.humantohumanvax)

I

Infectious (class in laser_cholera.metapop) (class in laser_cholera.metapop.infectious)

L

laser_cholera module laser_cholera.cli module laser_cholera.core module laser_cholera.iso_codes module laser_cholera.likelihood module laser_cholera.metapop module laser_cholera.metapop.analyzer module laser_cholera.metapop.census module laser_cholera.metapop.derivedvalues module laser_cholera.metapop.environmental module laser_cholera.metapop.envtohuman module laser_cholera.metapop.envtohumanvax module laser_cholera.metapop.exposed module laser_cholera.metapop.humantohuman module laser_cholera.metapop.humantohumanvax module

laser_cholera.metapop.infectious module laser_cholera.metapop.logsetup module laser_cholera.metapop.model module laser_cholera.metapop.params module laser_cholera.metapop.recorder module laser_cholera.metapop.recovered module laser_cholera.metapop.scenario module laser_cholera.metapop.susceptible module laser_cholera.metapop.utils module laser_cholera.metapop.vaccinated module laser_cholera.sc module laser_cholera.test module laser_cholera.utils module load_compressed_hdf5_parameters() (in module laser_cholera.metapop.params) load_compressed_json_parameters() (in module laser_cholera.metapop.params) load_hdf5() (in module laser_cholera.metapop.params) load_hdf5_parameters() (in module laser_cholera.metapop.params) load_json_parameters() (in module laser_cholera.metapop.params)

M

map_suitability_to_decay() (in module laser_cholera.metapop.environmental) Model (class in laser_cholera.metapop.model) module laser_cholera laser_cholera.cli laser_cholera.core laser_cholera.iso_codes laser_cholera.likelihood laser_cholera.metapop laser_cholera.metapop.analyzer laser_cholera.metapop.census laser_cholera.metapop.derivedvalues laser_cholera.metapop.environmental laser_cholera.metapop.envtohuman laser_cholera.metapop.envtohumanvax laser_cholera.metapop.exposed laser_cholera.metapop.humantohuman laser_cholera.metapop.humantohumanvax laser_cholera.metapop.infectious laser_cholera.metapop.logsetup laser_cholera.metapop.model laser_cholera.metapop.params laser_cholera.metapop.recorder laser_cholera.metapop.recovered laser_cholera.metapop.scenario laser_cholera.metapop.susceptible laser_cholera.metapop.utils laser_cholera.metapop.vaccinated laser_cholera.sc laser_cholera.test laser_cholera.utils

O

override_helper() (in module laser_cholera.metapop.utils)

P

Parameters (class in laser_cholera.metapop) (class in laser_cholera.metapop.params) parse_rgb() (in module laser_cholera.sc) plot() (laser_cholera.metapop.Analyzer method) (laser_cholera.metapop.analyzer.Analyzer method) (laser_cholera.metapop.Census method) (laser_cholera.metapop.census.Census method) (laser_cholera.metapop.DerivedValues method) (laser_cholera.metapop.derivedvalues.DerivedValues method) (laser_cholera.metapop.Environmental method) (laser_cholera.metapop.environmental.Environmental method) (laser_cholera.metapop.EnvToHuman method) (laser_cholera.metapop.envtohuman.EnvToHuman method) (laser_cholera.metapop.EnvToHumanVax method) (laser_cholera.metapop.envtohumanvax.EnvToHumanVax method) (laser_cholera.metapop.Exposed method) (laser_cholera.metapop.exposed.Exposed method) (laser_cholera.metapop.HumanToHuman method) (laser_cholera.metapop.humantohuman.HumanToHuman method) (laser_cholera.metapop.HumanToHumanVax method) (laser_cholera.metapop.humantohumanvax.HumanToHumanVax method) (laser_cholera.metapop.Infectious method) (laser_cholera.metapop.infectious.Infectious method) (laser_cholera.metapop.model.Model method) (laser_cholera.metapop.Parameters method) (laser_cholera.metapop.params.Parameters method) (laser_cholera.metapop.Recovered method) (laser_cholera.metapop.recovered.Recovered method) (laser_cholera.metapop.Susceptible method) (laser_cholera.metapop.susceptible.Susceptible method) (laser_cholera.metapop.Vaccinated method) (laser_cholera.metapop.vaccinated.Vaccinated method) (laser_cholera.test.Eradication method)

plot_helper() (in module laser_cholera.metapop.envtohumanvax) (in module laser_cholera.metapop.humantohumanvax) printcyan() (in module laser_cholera.sc) printgreen() (in module laser_cholera.sc) printred() (in module laser_cholera.sc) PropertySetEx (class in laser_cholera.metapop.params) PseEncoder (class in laser_cholera.metapop.params)

R

Recorder (class in laser_cholera.metapop) (class in laser_cholera.metapop.recorder) Recovered (class in laser_cholera.metapop) (class in laser_cholera.metapop.recovered)

run() (laser_cholera.metapop.model.Model method) run_model() (in module laser_cholera.metapop.model)

S

save_compressed_hdf5_parameters() (in module laser_cholera.metapop.recorder) save_hdf5() (in module laser_cholera.metapop.recorder) save_hdf5_parameters() (in module laser_cholera.metapop.recorder)

setup_logging() (in module laser_cholera.metapop.logsetup) sim_duration() (in module laser_cholera.utils) Susceptible (class in laser_cholera.metapop) (class in laser_cholera.metapop.susceptible)

V

Vaccinated (class in laser_cholera.metapop) (class in laser_cholera.metapop.vaccinated)

validate_parameters() (in module laser_cholera.metapop.params) visualize() (laser_cholera.metapop.model.Model method)