laser_measles.abm.utils

utils()

This module provides utility functions for the laser-measles project.

Functions:

calc_distances(latitudes: np.ndarray, longitudes: np.ndarray, verbose: bool = False) -> np.ndarray:

Calculate the pairwise distances between points given their latitudes and longitudes.

calc_capacity(population: np.uint32, nticks: np.uint32, cbr: np.float32, verbose: bool = False) -> np.uint32:

Calculate the population capacity after a given number of ticks based on a constant birth rate.

seed_infections_randomly(model, ninfections: int = 100) -> None:

Seed initial infections in random locations at the start of the simulation.

seed_infections_in_patch(model, ipatch: int, ninfections: int = 100) -> None:

Seed initial infections in a specific location at the start of the simulation.

set_initial_susceptibility_randomly(model, susc_frac: float = 1.0) -> None:

Set the population susceptibility level at the start of the simulation.

set_initial_susceptibility_in_patch(model, ipatch: int, susc_frac: float = 1.0) -> None:

Set the population susceptibility level at the start of the simulation in a specific patch.