phylomodels.features.trees package

Subpackages

• phylomodels.features.trees.helper package
  • Submodules
    • phylomodels.features.trees.helper.calculate_branch_length_metrics module
    • phylomodels.features.trees.helper.check_values module
    • phylomodels.features.trees.helper.get_LTT module
    • phylomodels.features.trees.helper.get_adjacency_mat module
    • phylomodels.features.trees.helper.get_distance_mat module
    • phylomodels.features.trees.helper.get_eigenvalues_adj module
    • phylomodels.features.trees.helper.get_eigenvalues_dist_lap module
    • phylomodels.features.trees.helper.get_eigenvalues_lap module
    • phylomodels.features.trees.helper.get_groups module
    • phylomodels.features.trees.helper.get_node_properties module
    • phylomodels.features.trees.helper.process_optional_arguements module
    • phylomodels.features.trees.helper.unique_node_attr module

Submodules

• phylomodels.features.trees.BL_calculate_external_max module
• phylomodels.features.trees.BL_calculate_external_mean module
• phylomodels.features.trees.BL_calculate_external_median module
• phylomodels.features.trees.BL_calculate_external_min module
• phylomodels.features.trees.BL_calculate_external_std module
• phylomodels.features.trees.BL_calculate_internal_max module
• phylomodels.features.trees.BL_calculate_internal_mean module
• phylomodels.features.trees.BL_calculate_internal_median module
• phylomodels.features.trees.BL_calculate_internal_min module
• phylomodels.features.trees.BL_calculate_internal_std module
• phylomodels.features.trees.BL_calculate_max module
• phylomodels.features.trees.BL_calculate_mean module
• phylomodels.features.trees.BL_calculate_median module
• phylomodels.features.trees.BL_calculate_min module
• phylomodels.features.trees.BL_calculate_ratio_max module
• phylomodels.features.trees.BL_calculate_ratio_mean module
• phylomodels.features.trees.BL_calculate_ratio_median module
• phylomodels.features.trees.BL_calculate_ratio_min module
• phylomodels.features.trees.BL_calculate_ratio_std module
• phylomodels.features.trees.BL_calculate_std module
• phylomodels.features.trees.LTT_calculate_max_lineages module
• phylomodels.features.trees.LTT_calculate_mean_b_time module
• phylomodels.features.trees.LTT_calculate_mean_s_time module
• phylomodels.features.trees.LTT_calculate_slope_1 module
• phylomodels.features.trees.LTT_calculate_slope_2 module
• phylomodels.features.trees.LTT_calculate_slope_ratio module
• phylomodels.features.trees.LTT_calculate_t_max_lineages module
• phylomodels.features.trees.calculate_external_branch_length_metrics module
• phylomodels.features.trees.group_calculate_max module
• phylomodels.features.trees.group_calculate_mean module
• phylomodels.features.trees.group_calculate_median module
• phylomodels.features.trees.group_calculate_min module
• phylomodels.features.trees.group_calculate_mode module
• phylomodels.features.trees.group_calculate_num module
• phylomodels.features.trees.group_calculate_std module
• phylomodels.features.trees.local_calculate_LBI_mean module
• phylomodels.features.trees.local_calculate_frac_basal module
• phylomodels.features.trees.mean_NN_distance module
• phylomodels.features.trees.netSci_calculate_betweenness_max module
• phylomodels.features.trees.netSci_calculate_closeness_max module
• phylomodels.features.trees.netSci_calculate_diameter module
• phylomodels.features.trees.netSci_calculate_eigen_centrality_max module
• phylomodels.features.trees.netSci_calculate_mean_path module
• phylomodels.features.trees.smallConfig_calculate_cherries module
• phylomodels.features.trees.smallConfig_calculate_double_cherries module
• phylomodels.features.trees.smallConfig_calculate_fourprong module
• phylomodels.features.trees.smallConfig_calculate_pitchforks module
• phylomodels.features.trees.spectral_calculate_eigen_gap module
• phylomodels.features.trees.spectral_calculate_kurtosis module
• phylomodels.features.trees.spectral_calculate_max_adj_eigen module
• phylomodels.features.trees.spectral_calculate_max_distLap_eigen module
• phylomodels.features.trees.spectral_calculate_max_lap_eigen module
• phylomodels.features.trees.spectral_calculate_min_adj_eigen module
• phylomodels.features.trees.spectral_calculate_min_lap_eigen module
• phylomodels.features.trees.spectral_calculate_skewness module
• phylomodels.features.trees.top_calculate_B1 module
• phylomodels.features.trees.top_calculate_B2 module
• phylomodels.features.trees.top_calculate_FurnasR module
• phylomodels.features.trees.top_calculate_WD_ratio module
• phylomodels.features.trees.top_calculate_colless module
• phylomodels.features.trees.top_calculate_frac_imbalance module
• phylomodels.features.trees.top_calculate_frac_ladder module
• phylomodels.features.trees.top_calculate_max_dW module
• phylomodels.features.trees.top_calculate_max_ladder module
• phylomodels.features.trees.top_calculate_mean_imbalance_ratio module
• phylomodels.features.trees.top_calculate_sackin module
• phylomodels.features.trees.top_calculate_sackin_var module
• phylomodels.features.trees.tree_height_calculate_max module
• phylomodels.features.trees.tree_height_calculate_mean module
• phylomodels.features.trees.tree_height_calculate_min module