Index A | B | C | D | E | F | G | H | I | M | N | O | P | R | S | T | U | V | W A active (stisim.diseases.syphilis.Syphilis property) acute_decline() (stisim.diseases.hiv.HIV method) add_pairs() (stisim.networks.StructuredSexual method) administer() (stisim.interventions.base_interventions.ProductMix method) (stisim.interventions.base_interventions.STIDx method) (stisim.interventions.base_interventions.STITreatment method) (stisim.interventions.hiv_interventions.HIVDx method) (stisim.interventions.syphilis_interventions.NewbornTreatment method) (stisim.interventions.syphilis_interventions.SyphTx method) AgeApproxMSM (class in stisim.networks) AgeMatchedMSM (class in stisim.networks) ANCSyphTest (class in stisim.interventions.syphilis_interventions) ART (class in stisim.interventions.hiv_interventions) art_coverage_correction() (stisim.interventions.hiv_interventions.ART method) assumption (stisim.utils.TimeSeries attribute) B BaseSTI (class in stisim.diseases.sti) BV (class in stisim.diseases.bv) bv_sus() (stisim.diseases.bv.BV method) C calibrate() (stisim.calibration.Calibration method) Calibration (class in stisim.calibration) cd4_increase() (stisim.diseases.hiv.HIV method) change_states() (stisim.interventions.base_interventions.STITreatment method) (stisim.interventions.syphilis_interventions.NewbornTreatment method) (stisim.interventions.syphilis_interventions.SyphTx method) Chlamydia (class in stisim.diseases.chlamydia) ChlamydiaBL (class in stisim.diseases.chlamydia) clear_infection() (stisim.diseases.bv.BV method) (stisim.diseases.sti.SEIS method) compute_fit() (stisim.calibration.Calibration method) compute_gof() (in module stisim.calibration) confirm_fit() (stisim.calibration.Calibration method) copy() (stisim.utils.TimeSeries method) count_partners() (stisim.networks.StructuredSexual method) D death_prob() (stisim.diseases.hiv.HIV static method) dur_post_art_fn() (stisim.diseases.hiv.HIV static method) dur_post_art_mean() (stisim.diseases.hiv.HIV static method) dur_post_art_scale() (stisim.diseases.hiv.HIV static method) E end_pairs() (stisim.networks.StructuredSexual method) F falling_decline() (stisim.diseases.hiv.HIV method) FastStructuredSexual (class in stisim.networks) finalize_results() (in module stisim.utils) (stisim.diseases.syphilis.Syphilis method) G get() (stisim.utils.TimeSeries method) get_age_risk_pars() (stisim.networks.StructuredSexual method) get_arrays() (stisim.utils.TimeSeries method) get_candidates() (stisim.interventions.base_interventions.STITreatment method) get_testers() (stisim.interventions.base_interventions.STITest method) (stisim.interventions.syphilis_interventions.ANCSyphTest method) (stisim.interventions.syphilis_interventions.NewbornSyphTest method) Gonorrhea (class in stisim.diseases.gonorrhea) GonorrheaTreatment (class in stisim.interventions.gonorrhea_interventions) GUD (class in stisim.diseases.gud) gud_syph (class in stisim.connectors.gud_syph) GUDPlaceholder (class in stisim.diseases.gud) H has_data (stisim.utils.TimeSeries property) has_time_data (stisim.utils.TimeSeries property) HIV (class in stisim.diseases.hiv) hiv_bv (class in stisim.connectors.hiv_sti) hiv_ct (class in stisim.connectors.hiv_sti) hiv_ng (class in stisim.connectors.hiv_sti) hiv_syph (class in stisim.connectors.hiv_sti) hiv_tv (class in stisim.connectors.hiv_sti) HIVDx (class in stisim.interventions.hiv_interventions) HIVTest (class in stisim.interventions.hiv_interventions) I identify_contacts() (stisim.interventions.base_interventions.PartnerNotification method) include_mtct (stisim.diseases.hiv.HIV property) infect() (stisim.diseases.bv.BV method) (stisim.diseases.sti.BaseSTI method) infectious (stisim.diseases.syphilis.Syphilis property) init_care_seeking() (stisim.diseases.hiv.HIV method) init_cd4() (stisim.diseases.hiv.HIV method) init_post() (stisim.diseases.bv.BV method) (stisim.diseases.hiv.HIV method) (stisim.diseases.syphilis.Syphilis method) (stisim.interventions.gonorrhea_interventions.UpdateDrugs method) (stisim.networks.StructuredSexual method) init_pre() (stisim.diseases.gud.Placeholder method) (stisim.diseases.syphilis.SyphilisPlaceholder method) (stisim.interventions.base_interventions.ProductMix method) (stisim.interventions.base_interventions.STITest method) (stisim.interventions.base_interventions.SymptomaticTesting method) (stisim.interventions.hiv_interventions.ART method) (stisim.interventions.hiv_interventions.VMMC method) (stisim.interventions.syphilis_interventions.SyphTest method) (stisim.networks.StructuredSexual method) init_results() (stisim.diseases.bv.BV method) (stisim.diseases.gonorrhea.Gonorrhea method) (stisim.diseases.hiv.HIV method) (stisim.diseases.sti.SEIS method) (stisim.diseases.syphilis.Syphilis method) (stisim.interventions.base_interventions.STITest method) (stisim.interventions.base_interventions.STITreatment method) (stisim.interventions.base_interventions.SymptomaticTesting method) (stisim.interventions.hiv_interventions.VMMC method) (stisim.networks.StructuredSexual method) insert() (stisim.utils.TimeSeries method) interpolate() (stisim.utils.TimeSeries method) M make_init_prev_fn() (in module stisim.utils) (stisim.diseases.gud.GUD static method) (stisim.diseases.hiv.HIV static method) (stisim.diseases.sti.BaseSTI static method) (stisim.diseases.syphilis.Syphilis static method) make_init_prev_latent_fn() (stisim.diseases.syphilis.Syphilis static method) make_study() (stisim.calibration.Calibration method) make_test_prob_fn() (stisim.interventions.base_interventions.STITest static method) (stisim.interventions.syphilis_interventions.SyphTest static method) match_pairs() (stisim.networks.AgeApproxMSM method) (stisim.networks.AgeMatchedMSM method) (stisim.networks.FastStructuredSexual method) (stisim.networks.StructuredSexual method) match_sex_workers() (stisim.networks.StructuredSexual method) module stisim stisim.calibration stisim.connectors stisim.connectors.gud_syph stisim.connectors.hiv_sti stisim.diseases stisim.diseases.bv stisim.diseases.chlamydia stisim.diseases.gonorrhea stisim.diseases.gud stisim.diseases.hiv stisim.diseases.sti stisim.diseases.syphilis stisim.diseases.trichomoniasis stisim.interventions stisim.interventions.base_interventions stisim.interventions.gonorrhea_interventions stisim.interventions.hiv_interventions stisim.interventions.syphilis_interventions stisim.networks stisim.utils stisim.version N naive (stisim.diseases.syphilis.Syphilis property) net_beta() (stisim.networks.StructuredSexual method) NewbornSyphTest (class in stisim.interventions.syphilis_interventions) NewbornTreatment (class in stisim.interventions.syphilis_interventions) notify() (stisim.interventions.base_interventions.PartnerNotification method) O over_debut() (stisim.networks.StructuredSexual method) P p_positive() (stisim.interventions.base_interventions.STIDx method) parse_study() (stisim.calibration.Calibration method) PartnerNotification (class in stisim.interventions.base_interventions) Placeholder (class in stisim.diseases.gud) plot_sims() (stisim.calibration.Calibration method) plot_trend() (stisim.calibration.Calibration method) post_art_decline() (stisim.diseases.hiv.HIV method) Prep (class in stisim.interventions.hiv_interventions) prioritize_art() (stisim.interventions.hiv_interventions.ART method) process_condom_data() (stisim.networks.StructuredSexual static method) process_data() (stisim.interventions.syphilis_interventions.SyphTest method) ProductMix (class in stisim.interventions.base_interventions) R remove() (stisim.utils.TimeSeries method) remove_after() (stisim.utils.TimeSeries method) remove_before() (stisim.utils.TimeSeries method) remove_between() (stisim.utils.TimeSeries method) remove_db() (stisim.calibration.Calibration method) run_sim() (stisim.calibration.Calibration method) run_trial() (stisim.calibration.Calibration method) run_workers() (stisim.calibration.Calibration method) S sample() (stisim.utils.TimeSeries method) schedule() (stisim.interventions.base_interventions.STITest method) schedule_tests() (stisim.interventions.syphilis_interventions.ANCSyphTest method) SEIS (class in stisim.diseases.sti) set_care_seeking() (stisim.diseases.bv.BV method) (stisim.diseases.sti.SEIS method) set_concurrency() (stisim.networks.StructuredSexual method) set_condom_use() (stisim.networks.StructuredSexual method) set_congenital() (stisim.diseases.hiv.HIV method) (stisim.diseases.syphilis.Syphilis method) set_ct_load() (stisim.diseases.chlamydia.ChlamydiaBL method) set_debut() (stisim.networks.StructuredSexual method) set_duration() (stisim.diseases.bv.BV method) (stisim.diseases.sti.SEIS method) (stisim.diseases.trichomoniasis.Trichomoniasis method) set_exposure() (stisim.diseases.sti.SEIS method) set_hygiene_states() (stisim.diseases.bv.BV method) set_infection() (stisim.diseases.bv.BV method) set_latent_prognoses() (stisim.diseases.syphilis.Syphilis method) set_latent_trans() (stisim.diseases.syphilis.Syphilis method) set_network_states() (stisim.networks.StructuredSexual method) set_pars() (stisim.diseases.sti.SEIS method) set_pid() (stisim.diseases.sti.SEIS method) set_pid_care_seeking() (stisim.diseases.sti.SEIS method) set_prognoses() (stisim.diseases.bv.BV method) (stisim.diseases.chlamydia.ChlamydiaBL method) (stisim.diseases.gonorrhea.Gonorrhea method) (stisim.diseases.gud.GUD method) (stisim.diseases.gud.Placeholder method) (stisim.diseases.hiv.HIV method) (stisim.diseases.sti.SEIS method) (stisim.diseases.syphilis.Syphilis method) (stisim.diseases.syphilis.SyphilisPlaceholder method) set_risk_groups() (stisim.networks.StructuredSexual method) set_secondary_prognoses() (stisim.diseases.syphilis.Syphilis method) set_sex_work() (stisim.networks.StructuredSexual method) set_symptoms() (stisim.diseases.bv.BV method) (stisim.diseases.sti.SEIS method) set_treat_eff() (stisim.interventions.base_interventions.STITreatment method) (stisim.interventions.gonorrhea_interventions.GonorrheaTreatment method) shrink() (stisim.calibration.Calibration static method) shrink_calib() (in module stisim.utils) sigma (stisim.utils.TimeSeries attribute) spontaneous() (stisim.diseases.bv.BV method) start_art() (stisim.diseases.hiv.HIV method) states (stisim.interventions.base_interventions.STITest property) step() (stisim.connectors.hiv_sti.hiv_bv method) (stisim.connectors.hiv_sti.hiv_ct method) (stisim.connectors.hiv_sti.hiv_ng method) (stisim.connectors.hiv_sti.hiv_syph method) (stisim.connectors.hiv_sti.hiv_tv method) (stisim.diseases.bv.BV method) (stisim.interventions.base_interventions.PartnerNotification method) (stisim.interventions.base_interventions.STITest method) (stisim.interventions.base_interventions.STITreatment method) (stisim.interventions.base_interventions.SymptomaticTesting method) (stisim.interventions.gonorrhea_interventions.GonorrheaTreatment method) (stisim.interventions.gonorrhea_interventions.UpdateDrugs method) (stisim.interventions.hiv_interventions.ART method) (stisim.interventions.hiv_interventions.HIVTest method) (stisim.interventions.hiv_interventions.Prep method) (stisim.interventions.hiv_interventions.VMMC method) (stisim.interventions.syphilis_interventions.ANCSyphTest method) (stisim.interventions.syphilis_interventions.SyphTest method) (stisim.interventions.syphilis_interventions.SyphTx method) (stisim.networks.StructuredSexual method) step_die() (stisim.diseases.hiv.HIV method) step_state() (stisim.diseases.bv.BV method) (stisim.diseases.gud.GUD method) (stisim.diseases.hiv.HIV method) (stisim.diseases.sti.SEIS method) (stisim.diseases.syphilis.Syphilis method) (stisim.diseases.syphilis.SyphilisPlaceholder method) STIDx (class in stisim.interventions.base_interventions) stisim module stisim.calibration module stisim.connectors module stisim.connectors.gud_syph module stisim.connectors.hiv_sti module stisim.diseases module stisim.diseases.bv module stisim.diseases.chlamydia module stisim.diseases.gonorrhea module stisim.diseases.gud module stisim.diseases.hiv module stisim.diseases.sti module stisim.diseases.syphilis module stisim.diseases.trichomoniasis module stisim.interventions module stisim.interventions.base_interventions module stisim.interventions.gonorrhea_interventions module stisim.interventions.hiv_interventions module stisim.interventions.syphilis_interventions module stisim.networks module stisim.utils module stisim.version module STITest (class in stisim.interventions.base_interventions) STITreatment (class in stisim.interventions.base_interventions) stop_art() (stisim.diseases.hiv.HIV method) StructuredSexual (class in stisim.networks) sus_not_naive (stisim.diseases.syphilis.Syphilis property) symptomatic (stisim.diseases.hiv.HIV property) SymptomaticTesting (class in stisim.interventions.base_interventions) SyphDx (class in stisim.interventions.syphilis_interventions) Syphilis (class in stisim.diseases.syphilis) SyphilisPlaceholder (class in stisim.diseases.syphilis) SyphTest (class in stisim.interventions.syphilis_interventions) SyphTx (class in stisim.interventions.syphilis_interventions) T t (stisim.utils.TimeSeries attribute) TimeSeries (class in stisim.utils) to_json() (stisim.calibration.Calibration method) translate_pars() (stisim.calibration.Calibration static method) treat_fetus() (stisim.interventions.syphilis_interventions.SyphTx method) treatable (stisim.diseases.bv.BV property) (stisim.diseases.sti.SEIS property) trial_to_sim_pars() (stisim.calibration.Calibration method) Trichomoniasis (class in stisim.diseases.trichomoniasis) U units (stisim.utils.TimeSeries attribute) update() (stisim.connectors.gud_syph.gud_syph method) update_ct_load() (stisim.diseases.chlamydia.ChlamydiaBL method) update_negatives() (stisim.interventions.syphilis_interventions.SyphTest method) update_positives() (stisim.interventions.syphilis_interventions.SyphTest method) update_pre() (stisim.diseases.chlamydia.ChlamydiaBL method) (stisim.diseases.gud.Placeholder method) update_results() (stisim.diseases.bv.BV method) (stisim.diseases.hiv.HIV method) (stisim.diseases.sti.SEIS method) (stisim.diseases.syphilis.Syphilis method) (stisim.interventions.base_interventions.STITest method) (stisim.interventions.base_interventions.STITreatment method) (stisim.interventions.base_interventions.SymptomaticTesting method) (stisim.interventions.gonorrhea_interventions.GonorrheaTreatment method) (stisim.interventions.syphilis_interventions.SyphTest method) (stisim.networks.StructuredSexual method) update_transmission() (stisim.diseases.hiv.HIV method) UpdateDrugs (class in stisim.interventions.gonorrhea_interventions) V validate_beta() (stisim.diseases.sti.BaseSTI method) vals (stisim.utils.TimeSeries attribute) VDPlaceholder (class in stisim.diseases.gud) VMMC (class in stisim.interventions.hiv_interventions) W wipe_dates() (stisim.diseases.bv.BV method) (stisim.diseases.sti.SEIS method) worker() (stisim.calibration.Calibration method)
