emod_api.demographics package

Subpackages

• emod_api.demographics.service package
  • Submodules
    • emod_api.demographics.service.grid_construction module
      • get_grid_cell_id()
      • construct()
      • get_bbox()
      • lon_lat_2_point()
      • point_2_grid_cell_id_lookup()
    • emod_api.demographics.service.service module

Submodules

• emod_api.demographics.BaseInputFile module
  • BaseInputFile
    • BaseInputFile.generate_file()
    • BaseInputFile.generate_headers()
• emod_api.demographics.Demographics module
  • from_template_node()
  • from_file()
  • get_node_ids_from_file()
  • get_node_pops_from_params()
  • from_params()
  • from_csv()
  • from_pop_raster_csv()
  • from_pop_csv()
  • DemographicsBase
    • DemographicsBase.UnknownNodeException
    • DemographicsBase.apply_overlay()
    • DemographicsBase.send()
    • DemographicsBase.node_ids
    • DemographicsBase.node_count
    • DemographicsBase.get_node()
    • DemographicsBase.get_node_by_id()
    • DemographicsBase.get_nodes_by_id()
    • DemographicsBase.SetMigrationPattern()
    • DemographicsBase.SetRoundTripMigration()
    • DemographicsBase.SetOneWayMigration()
    • DemographicsBase.SetSimpleVitalDynamics()
    • DemographicsBase.SetEquilibriumVitalDynamics()
    • DemographicsBase.SetEquilibriumVitalDynamicsFromWorldBank()
    • DemographicsBase.SetIndividualAttributesWithFertMort()
    • DemographicsBase.AddIndividualPropertyAndHINT()
    • DemographicsBase.AddAgeDependentTransmission()
    • DemographicsBase.SetDefaultIndividualAttributes()
    • DemographicsBase.SetMinimalNodeAttributes()
    • DemographicsBase.SetBirthRate()
    • DemographicsBase.SetMortalityRate()
    • DemographicsBase.SetMortalityDistribution()
    • DemographicsBase.SetVitalDynamicsFromWHOFile()
    • DemographicsBase.SetMortalityDistributionFemale()
    • DemographicsBase.SetMortalityDistributionMale()
    • DemographicsBase.SetMortalityOverTimeFromData()
    • DemographicsBase.SetAgeDistribution()
    • DemographicsBase.SetDefaultNodeAttributes()
    • DemographicsBase.SetDefaultIndividualProperties()
    • DemographicsBase.SetDefaultProperties()
    • DemographicsBase.SetDefaultPropertiesFertMort()
    • DemographicsBase.SetDefaultFromTemplate()
    • DemographicsBase.SetNodeDefaultFromTemplate()
    • DemographicsBase.SetVitalDynamicsFromTemplate()
    • DemographicsBase.SetEquilibriumAgeDistFromBirthAndMortRates()
    • DemographicsBase.SetInitialAgeExponential()
    • DemographicsBase.SetInitialAgeLikeSubSaharanAfrica()
    • DemographicsBase.SetOverdispersion()
    • DemographicsBase.SetConstantSusceptibility()
    • DemographicsBase.SetInitPrevFromUniformDraw()
    • DemographicsBase.SetConstantRisk()
    • DemographicsBase.SetHeteroRiskUniformDist()
    • DemographicsBase.SetHeteroRiskLognormalDist()
    • DemographicsBase.SetHeteroRiskExponDist()
    • DemographicsBase.AddMortalityByAgeSexAndYear()
    • DemographicsBase.SetFertilityOverTimeFromParams()
    • DemographicsBase.infer_natural_mortality()
  • DemographicsOverlay
    • DemographicsOverlay.to_dict()
    • DemographicsOverlay.to_file()
  • Demographics
    • Demographics.to_dict()
    • Demographics.generate_file()
• emod_api.demographics.DemographicsGenerator module
  • InvalidResolution
  • DemographicsType
    • DemographicsType.STATIC
  • arcsec_to_deg()
  • validate_res_in_arcsec()
  • DemographicsGenerator
    • DemographicsGenerator.set_resolution()
    • DemographicsGenerator.generate_nodes()
    • DemographicsGenerator.generate_metadata()
    • DemographicsGenerator.generate_demographics()
  • from_dataframe()
  • from_file()
• emod_api.demographics.DemographicsInputDataParsers module
  • node_ID_from_lat_long()
  • duplicate_nodeID_check()
  • fill_nodes_legacy()
  • ConstructNodesFromDataFrame()
• emod_api.demographics.DemographicsTemplates module
  • DemographicsTemplatesConstants
    • DemographicsTemplatesConstants.Mortality_Rates_Mod30_5yrs_Xval
  • CrudeRate
    • CrudeRate.get_dtk_rate()
  • YearlyRate
  • DtkRate
  • NoRisk()
  • FullRisk()
  • InitRiskUniform()
  • InitRiskLogNormal()
  • InitRiskExponential()
  • NoInitialPrevalence()
  • InitPrevUniform()
  • InitSusceptConstant()
  • EveryoneInitiallySusceptible()
  • StepFunctionSusceptibility()
  • SimpleSusceptibilityDistribution()
  • DefaultSusceptibilityDistribution()
  • MortalityRateByAge()
  • MortalityStructureNigeriaDHS()
  • get_fert_dist_from_rates()
  • get_fert_dist()
  • InitAgeUniform()
  • AgeStructureUNWPP()
  • birthrate_multiplier()
  • demographicsBuilder()
• emod_api.demographics.Node module
  • Node
    • Node.default_population
    • Node.res_in_degrees
    • Node.name
    • Node.has_individual_property()
    • Node.get_individual_property()
    • Node.to_dict()
    • Node.to_tuple()
    • Node.id
    • Node.init_resolution_from_file()
    • Node.from_data()
    • Node.pop
    • Node.lon
    • Node.lat
    • Node.birth_rate
  • OverlayNode
  • get_xpix_ypix()
  • lat_lon_from_nodeid()
  • xpix_ypix_from_lat_lon()
  • nodeid_from_lat_lon()
  • nodes_for_DTK()
  • basicNode()
• emod_api.demographics.PreDefinedDistributions module
  • ConstantDistribution
    • ConstantDistribution.to_dict()
    • ConstantDistribution.copy()
• emod_api.demographics.PropertiesAndAttributes module
  • IndividualProperty
    • IndividualProperty.to_dict()
    • IndividualProperty.from_dict()
  • IndividualProperties
    • IndividualProperties.DuplicateIndividualPropertyException
    • IndividualProperties.NoSuchIndividualPropertyException
    • IndividualProperties.add()
    • IndividualProperties.add_parameter()
    • IndividualProperties.ip_by_name
    • IndividualProperties.has_individual_property()
    • IndividualProperties.get_individual_property()
    • IndividualProperties.remove_individual_property()
    • IndividualProperties.to_dict()
  • IndividualAttributes
    • IndividualAttributes.SusceptibilityDistribution
      • IndividualAttributes.SusceptibilityDistribution.to_dict()
    • IndividualAttributes.AgeDistribution
      • IndividualAttributes.AgeDistribution.num_dist_axes
      • IndividualAttributes.AgeDistribution.to_dict()
      • IndividualAttributes.AgeDistribution.from_dict()
    • IndividualAttributes.FertilityDistribution
      • IndividualAttributes.FertilityDistribution.num_distribution_axes
      • IndividualAttributes.FertilityDistribution.num_population_axes
      • IndividualAttributes.FertilityDistribution.num_population_groups
      • IndividualAttributes.FertilityDistribution.to_dict()
      • IndividualAttributes.FertilityDistribution.from_dict()
    • IndividualAttributes.MortalityDistribution
      • IndividualAttributes.MortalityDistribution.num_distribution_axes
      • IndividualAttributes.MortalityDistribution.num_population_axes
      • IndividualAttributes.MortalityDistribution.num_population_groups
      • IndividualAttributes.MortalityDistribution.to_dict()
      • IndividualAttributes.MortalityDistribution.from_dict()
    • IndividualAttributes.to_dict()
    • IndividualAttributes.from_dict()
  • NodeAttributes
    • NodeAttributes.from_dict()
    • NodeAttributes.to_dict()
• emod_api.demographics.Updateable module
  • Updateable
    • Updateable.to_dict()
    • Updateable.update()
    • Updateable.add_parameter()
• emod_api.demographics.demographics_utils module
  • set_risk_mod()
  • set_immune_mod()
  • apply_to_defaults_or_nodes()
  • set_demog_distributions()
  • set_static_demographics()
  • set_growing_demographics()