Vector species output report (VectorSpeciesReport.json)¶

The vector species output report is a JSON-formatted file where the channel data has been sorted into bins. It is identical to the Binned output report, with the exception that the bins are based on vector species, and provides the average number of adult vectors per node for each species. The vector species report is generated for all malaria or vector simulations that contain values in the Vector_Species_Names configuration parameter. For example, if Vector_Species_Names was set to [“funestus”, “gambiae”], the report would provide the average number of female vectors per node for both A. funestus and A. gambiae. In the example below, the parameter Vector_Species_Names is set to [“arabiensis”], and so the report shows the average number of adult females per node of this one species.

The file name is VectorSpeciesReport.json and contains a header and a channels section.

Header¶

The header section contains the following parameters.

Parameter

Data type

Description

DateTime

string

The time stamp indicating when the report was generated.

DTK_Version

string

The version of EMOD used.

Report_Type

string

The type of output report.

Report_Version

string

The format version of the report.

Timesteps

integer

The number of time steps in this simulation.

Channels

integer

The number of channels in the simulation.

Subchannel_Metadata

nested JSON object

Metadata that describes the bins and axis information. The metadata includes the following parameters:

Parameter	Data type	Description
AxisLabels	array of strings	The name of each axis.
NumBinsPerAxis	array of integers	The number of bins per axis.
ValuesPerAxis	array of integers	The maximum value for each bin in the axis. For example, if the axis is “Age”, the values are age maximums in days.
MeaningPerAxis	array of strings	The “meaning” of each element in ValuesPerAxis. For example, if the axis is “Age”, this shows those values binned by age range, such as younger than 5 years, 5 to 9, and so on.

Channels¶

The channels section contains the following parameters.

Parameter	Data type	Description
<Channel_Title>	string	The title of the particular channel.
Units	string	The units used for this channel.
Data	array	A list of the channel data at each time step.

Example¶

The following is a sample of an VectorSpeciesReport.json file.

{
     "Header": {
          "DateTime": "Thu Jul 23 13:06:54 2015",
          "DTK_Version": "5004 trunk Jun 25 2015",
          "Report_Version": "2.1",
          "Timesteps": 100,
          "Subchannel_Metadata": {
               "AxisLabels": [
                    ["Vector Species"]
               ],
               "NumBinsPerAxis": [
                    [1]
               ],
               "ValuesPerAxis": [
                    [
                         [0]
                    ]
               ],
               "MeaningPerAxis": [
                    [
                         ["arabiensis"]
                    ]
               ]
          },
          "Channels": 4
     },
     "Channels": {
          "Adult Vectors": {
               "Units": "",
               "Data": [
                    [8739, 7627, 6712, 5882, 5174, 4577, 4003, 3500, 3086, 2691, 2340, 2038, 1790, 1562, 1367, 1191, 1045, 924, 801, 704, 620, 540, 472, 412, 353, 314, 1188, 2198, 2152, 3738, 3706, 3918, 6105, 6197, 6897, 6632, 6656, 6858, 6748, 6390, 6300, 5540, 5284, 5230, 5744, 5487, 5689, 5563, 5935, 6077, 6091, 6123, 5970, 5879, 5956, 6220, 6315, 6361, 6144, 5943, 5193, 6508, 6692, 8009, 8139, 7800, 8575, 8431, 8126, 9099, 8682, 8691, 8499, 8901, 8603, 8359, 8135, 8068, 7890, 6884, 6667, 7782, 6809, 7698, 7520, 7447, 6513, 8771, 7674, 7577, 8048, 8304, 8448, 8710, 8881, 10137, 9867, 9320, 9019, 9754]
               ]
          },
          "Daily EIR": {
               "Units": "",
               "Data": [
                    [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.00400000018999, 0, 0.006000000052154, 0.01200000010431, 0.01200000010431, 0.006000000052154, 0.01200000010431, 0.01400000043213, 0.01999999955297, 0.04399999976158, 0.0380000025034, 0.03400000184774, 0.03400000184774, 0.02400000020862, 0.02600000053644, 0.03400000184774, 0.0379999987781, 0.03999999910593, 0.04600000008941, 0.04600000008941, 0.04399999976158, 0.05599999800324, 0.03200000151992, 0.02400000020862, 0.0380000025034, 0.02000000141561, 0.02799999900162, 0.01999999955297, 0.01800000108778, 0.01400000043213, 0.009999999776483, 0.00800000037998, 0.00800000037998, 0.009999999776483, 0.006000000052154, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0.002000000094995, 0, 0.002000000094995, 0.00400000018999, 0.002000000094995, 0.00800000037998, 0.006000000052154, 0.01799999922514, 0.01799999922514, 0.02400000020862, 0.02999999932945, 0.02799999900162, 0.02400000020862, 0.06000000238419]
               ]
          },
          "Daily HBR": {
               "Units": "",
               "Data": [
                    [5.640000343323, 4.909999847412, 4.430000305176, 3.762000083923, 3.458000183105, 2.966000080109, 2.68799996376, 2.226000070572, 2.041999816895, 1.78200006485, 1.50200009346, 1.351999998093, 1.195999979973, 1.089999914169, 0.8100000023842, 0.7920000553131, 0.6539999842644, 0.6039999723434, 0.539999961853, 0.4399999976158, 0.4039999842644, 0.3779999911785, 0.2840000092983, 0.2580000162125, 0.2320000082254, 0.2260000109673, 0.1800000071526, 0.6340000033379, 1.213999986649, 1.22000002861, 2.179999828339, 2.012000083923, 2.232000112534, 3.400000095367, 3.461999893188, 4.038000106812, 3.802000045776, 3.886000156403, 3.869999885559, 3.860000133514, 3.598000049591, 3.567999839783, 3.078000068665, 3.067999839783, 2.969999790192, 3.317999839783, 3.110000133514, 3.234000205994, 3.339999914169, 3.555999994278, 3.575999975204, 3.644000053406, 3.519999980927, 3.434000015259, 3.369999885559, 3.398000001907, 3.438000202179, 3.661999940872, 3.786000013351, 3.584000110626, 3.3140001297, 3.067999839783, 3.817999839783, 3.6859998703, 4.696000099182, 4.748000144958, 4.466000080109, 4.932000160217, 4.828000068665, 4.760000228882, 5.244000434875, 5.083999633789, 4.946000099182, 4.944000244141, 5.139999866486, 4.871999740601, 4.868000030518, 4.656000137329, 4.456000328064, 4.487999916077, 4.003999710083, 3.636000156403, 4.421999931335, 3.906000137329, 4.355999946594, 4.354000091553, 4.319999694824, 3.710000038147, 5.109999656677, 4.28200006485, 4.512000083923, 4.640000343323, 4.753999710083, 4.725999832153, 5.130000114441, 5.031999588013, 5.926000118256, 5.78600025177, 5.498000144958, 5.203999996185]
               ]
          },
          "Infectious Vectors": {
               "Units": "",
               "Data": [
                    [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.0001740947045619, 0.0007289958302863, 0.0007031112909317, 0.001617832109332, 0.001853412017226, 0.002468323102221, 0.003447709837928, 0.004246284719557, 0.005192629992962, 0.006973975338042, 0.009402283467352, 0.009967845864594, 0.009184481576085, 0.009432478807867, 0.0087890625, 0.009086320176721, 0.01251684967428, 0.00983405020088, 0.01046025101095, 0.008989886380732, 0.0088462959975, 0.009615384973586, 0.0103790089488, 0.008421302773058, 0.007506768219173, 0.005385207012296, 0.004952775780112, 0.00460246251896, 0.003529827110469, 0.003033366985619, 0.002673486014828, 0.002272999146953, 0.002212661318481, 0.001735250349157, 0.001520912512206, 0.001597908209078, 0.001199939986691, 0.001028013415635, 0.001028051134199, 0.0007794232224114, 0.0006648935959674, 0.0006714112823829, 0.0006141563062556, 0.0004560483503155, 0.0006515507120639, 0.0009238484781235, 0.0008697813027538, 0.001806358341128, 0.001775568234734, 0.002525832271203, 0.004391397349536, 0.004735128954053, 0.005472788121551, 0.006759656593204, 0.009646302089095, 0.007996719330549]
               ]
          }
     }
}