Index

A

add_ART_cascade() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_art_from_trigger() (in module emodpy_hiv.interventions.cascade_helpers) add_choice() (in module emodpy_hiv.interventions.cascade_helpers) add_csw() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_event_recorder() (in module emodpy_hiv.reporters.builtin) add_health_care_testing() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_historical_vmmc_nchooser() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_hiv_muxer_event_with_trigger() (in module emodpy_hiv.interventions.hivmuxer) add_human_migration_tracking() (in module emodpy_hiv.reporters.builtin) add_male_circumcision() (emodpy_hiv.country_model.Country method) add_nchooser_distributed_circumcision_event() (in module emodpy_hiv.interventions.nchooser) add_nchooser_event() (in module emodpy_hiv.interventions.nchooser) add_or_update_initial_cascade_state_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) add_or_update_initial_health_care_accessibility_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) add_or_update_initial_risk_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) add_pmtct() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_post_debut_coinfection() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_reference_tracked_event() (in module emodpy_hiv.interventions.cascade_helpers) add_report_event_counter() (in module emodpy_hiv.reporters.builtin) add_report_hiv_art() (in module emodpy_hiv.reporters.builtin) add_report_hiv_by_age_and_gender() (in module emodpy_hiv.reporters.builtin) add_report_hiv_infection() (in module emodpy_hiv.reporters.builtin) add_report_hiv_mortality() (in module emodpy_hiv.reporters.builtin) add_report_node_demographics() (in module emodpy_hiv.reporters.builtin) add_report_relationship_consummated() (in module emodpy_hiv.reporters.builtin) add_report_relationship_end() (in module emodpy_hiv.reporters.builtin) add_report_relationship_migration_tracking() (in module emodpy_hiv.reporters.builtin) add_report_relationship_start() (in module emodpy_hiv.reporters.builtin) add_report_simulation_stats() (in module emodpy_hiv.reporters.builtin) add_scheduled_event() (in module emodpy_hiv.interventions.cascade_helpers) add_state_ARTStaging() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_ARTStagingDiagnosticTest() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_HCTTestingLoop() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_HCTUptakeAtDebut() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_HCTUptakePostDebut() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_LinkingToART() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc)

add_state_LinkingToPreART() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_LostForever() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_OnART() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_OnPreART() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_TestingOnANC() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_TestingOnChild6w() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_state_TestingOnSymptomatic() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_test() (in module emodpy_hiv.interventions.cascade_helpers) add_traditional_male_circumcision() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) add_transmission_report() (in module emodpy_hiv.reporters.builtin) add_triggered_event() (in module emodpy_hiv.interventions.cascade_helpers) add_vmmc_reference_tracking() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) AddIndividualPropertyAndHINT() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) AgeBin (class in emodpy_hiv.demographics.country_models) AgeBin.InvalidAgeBinFormat AgeBin.NotMergeable agent-based model ALL (emodpy_hiv.demographics.country_models.AgeBin attribute) antibodies antibody antigen antigens apoptosis ART ART_STAGING (emodpy_hiv.campaign.coc.CascadeState attribute) (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_1 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_2 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_3 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_4 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_5 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_6 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_8 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_9 (emodpy_hiv.campaign.coc.CustomEvent attribute) ART_STAGING_DIAGNOSTIC_TEST (emodpy_hiv.campaign.coc.CascadeState attribute) Assortivity (class in emodpy_hiv.demographics.assortivity)

B

Boost boxcar function broadcast_event_delayed() (in module emodpy_hiv.interventions.utils) broadcast_event_immediate() (in module emodpy_hiv.interventions.utils)

build_campaign() (emodpy_hiv.country_model.Country method) (emodpy_hiv.country_model.Zambia method) build_config() (emodpy_hiv.country_model.Zambia method) build_demographics() (emodpy_hiv.country_model.Zambia method)

C

campaign (emodpy_hiv.emod_task.EMODHIVTask attribute) campaign event campaign file can_upsample_bins() (emodpy_hiv.demographics.country_models.AgeBin class method) capsid CascadeState (class in emodpy_hiv.campaign.coc) CD4 cells cell-mediated immunity channel class factory Clausius-Clayperon relation climate (emodpy_hiv.emod_task.EMODHIVTask attribute) coital dilution commercial (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) COMMERCIAL_DELAY_FROM_DEBUT_UPTAKE (emodpy_hiv.campaign.coc.CustomEvent attribute)

COMMERCIAL_DROPOUT (emodpy_hiv.campaign.coc.CustomEvent attribute) COMMERCIAL_UPTAKE (emodpy_hiv.campaign.coc.CustomEvent attribute) compartmental model ConcurrencyParameters (class in emodpy_hiv.demographics.concurrency_parameters) CondomUsageParameters (class in emodpy_hiv.demographics.condom_usage_parameters) config (emodpy_hiv.emod_task.EMODHIVTask attribute) config() (emodpy_hiv.reporters.builtin.ReportEventCounter method) (emodpy_hiv.reporters.builtin.ReportHumanMigrationTracking method) (emodpy_hiv.reporters.builtin.ReportNodeDemographics method) (emodpy_hiv.reporters.builtin.ReportRelationshipMigrationTracking method) (emodpy_hiv.reporters.builtin.ReportSimulationStats method) configuration file contains() (emodpy_hiv.demographics.country_models.AgeBin method) convert_time_value_map() (in module emodpy_hiv.campaign.coc) core Country (class in emodpy_hiv.country_model) CustomEvent (class in emodpy_hiv.campaign.coc)

D

data_root (emodpy_hiv.country_model.DefaultZambiaData attribute) declutter() (in module emodpy_hiv.interventions.utils) DEFAULT_DELIMITER (emodpy_hiv.demographics.country_models.AgeBin attribute) DefaultZambiaData (class in emodpy_hiv.country_model) demographics (emodpy_hiv.emod_task.EMODHIVTask attribute) demographics file dendritic cell destination node

deterministic diffusive migration disability-adjusted life years (DALY) disease-specific build DistributeIVByRefTrack() (in module emodpy_hiv.interventions.reftracker) DistributeIVByRefTrackCoord() (in module emodpy_hiv.interventions.reftrackercoord) download() (in module emodpy_hiv.download) dynamic link library (DLL)

E

EMODHIVTask (class in emodpy_hiv.emod_task) emodpy_hiv module emodpy_hiv.campaign module emodpy_hiv.campaign.coc module emodpy_hiv.country_data module emodpy_hiv.country_data.zambia module emodpy_hiv.country_model module emodpy_hiv.demographics module emodpy_hiv.demographics.assortivity module emodpy_hiv.demographics.concurrency_parameters module emodpy_hiv.demographics.condom_usage_parameters module emodpy_hiv.demographics.country_models module emodpy_hiv.demographics.DemographicsTemplates module emodpy_hiv.demographics.hiv_demographics module emodpy_hiv.demographics.hiv_node module emodpy_hiv.demographics.pair_formation_parameters module emodpy_hiv.demographics.relationship_parameters module emodpy_hiv.demographics.relationship_types module emodpy_hiv.demographics.society module emodpy_hiv.download module emodpy_hiv.emod_task module emodpy_hiv.interventions module emodpy_hiv.interventions.art module emodpy_hiv.interventions.artdropout module emodpy_hiv.interventions.artstagingbycd4agnosticdiag module emodpy_hiv.interventions.artstagingbycd4diag module emodpy_hiv.interventions.cascade_helpers module

emodpy_hiv.interventions.delay module emodpy_hiv.interventions.drawblood module emodpy_hiv.interventions.hivmuxer module emodpy_hiv.interventions.malecirc module emodpy_hiv.interventions.modcoinf module emodpy_hiv.interventions.nchooser module emodpy_hiv.interventions.outbreak module emodpy_hiv.interventions.pmtct module emodpy_hiv.interventions.prep module emodpy_hiv.interventions.randomchoice module emodpy_hiv.interventions.rapiddiag module emodpy_hiv.interventions.reftracker module emodpy_hiv.interventions.reftrackercoord module emodpy_hiv.interventions.setsexualdebut module emodpy_hiv.interventions.sigmoiddiag module emodpy_hiv.interventions.stipostdebut module emodpy_hiv.interventions.utils module emodpy_hiv.interventions.yearandsexdiag module emodpy_hiv.reporters module emodpy_hiv.reporters.builtin module emodpy_hiv.utils module EMODule entry inhibitors epidemic Epidemiological MODeling software (EMOD) epitope Eradication.exe Euler method event coordinator exp( exposed

F

female_mortality_file (emodpy_hiv.country_model.DefaultZambiaData attribute) fertility_file (emodpy_hiv.country_model.DefaultZambiaData attribute) flattened file force of infection (FoI) from_default() (emodpy_hiv.emod_task.EMODHIVTask class method) from_dict() (emodpy_hiv.demographics.assortivity.Assortivity class method) (emodpy_hiv.demographics.concurrency_parameters.ConcurrencyParameters class method) (emodpy_hiv.demographics.condom_usage_parameters.CondomUsageParameters class method) (emodpy_hiv.demographics.pair_formation_parameters.PairFormationParameters class method) (emodpy_hiv.demographics.relationship_parameters.RelationshipParameters class method) (emodpy_hiv.demographics.society.Society class method)

from_params() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_pop_csv() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_population_dataframe() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_string() (emodpy_hiv.demographics.country_models.AgeBin class method) from_template_node() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method)

G

get_concurrency_parameters_by_relationship_type_and_risk() (emodpy_hiv.demographics.society.Society method) get_default_society_dict() (in module emodpy_hiv.demographics.DemographicsTemplates) get_pair_formation_parameters_by_relationship_type() (emodpy_hiv.demographics.society.Society method) get_relationship_parameters_by_relationship_type() (emodpy_hiv.demographics.society.Society method)

get_society_dict() (in module emodpy_hiv.demographics.DemographicsTemplates) glycoproteins gp120 gp41

H

HCT_TESTING_LOOP (emodpy_hiv.campaign.coc.CascadeState attribute) (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_TESTING_LOOP_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_TESTING_LOOP_1 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_TESTING_LOOP_2 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_UPTAKE_AT_DEBUT (emodpy_hiv.campaign.coc.CascadeState attribute) HCT_UPTAKE_POST_DEBUT (emodpy_hiv.campaign.coc.CascadeState attribute) HCT_UPTAKE_POST_DEBUT_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_1 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_2 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_3 (emodpy_hiv.campaign.coc.CustomEvent attribute)

HCT_UPTAKE_POST_DEBUT_7 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_8 (emodpy_hiv.campaign.coc.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_9 (emodpy_hiv.campaign.coc.CustomEvent attribute) helper T-cells herd immunity Heterogeneous Intra-Node Transmission (HINT) high-performance computing (HPC) historical_vmmc_data_file (emodpy_hiv.country_model.DefaultZambiaData attribute) HIVDemographics (class in emodpy_hiv.demographics.hiv_demographics) HIVNode (class in emodpy_hiv.demographics.hiv_node) home node

I

immune implicit_configs (emodpy_hiv.emod_task.EMODHIVTask attribute) incidence individual properties infectious informal (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) initial_age_distribution_file (emodpy_hiv.country_model.DefaultZambiaData attribute)

initial_population_file (emodpy_hiv.country_model.DefaultZambiaData attribute) initialize_campaign() (emodpy_hiv.country_model.Country method) input files inset chart integrase integrase inhibitors intervention

J

JSON (JavaScript Object Notation)

K

Keyhole Markup Language (KML)

Koppen-Geiger Climate Classification System

L

lentivirus Link-Time Code Generation (LTCG) LINKING_TO_ART (emodpy_hiv.campaign.coc.CascadeState attribute) LINKING_TO_ART_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) LINKING_TO_PRE_ART (emodpy_hiv.campaign.coc.CascadeState attribute) LINKING_TO_PRE_ART_0 (emodpy_hiv.campaign.coc.CustomEvent attribute)

load_country_model_demographics_default() (in module emodpy_hiv.demographics.country_models) load_nchooser_distribution_data() (emodpy_hiv.country_model.Country static method) loss to follow-up (LTFU) LOST_FOREVER (emodpy_hiv.campaign.coc.CascadeState attribute) LOST_FOREVER_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) LOST_FOREVER_9 (emodpy_hiv.campaign.coc.CustomEvent attribute) LTFU

M

male_mortality_file (emodpy_hiv.country_model.DefaultZambiaData attribute) marital (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) merge() (emodpy_hiv.demographics.country_models.AgeBin method) merge_bins() (emodpy_hiv.demographics.country_models.AgeBin class method) Message Passing Interface (MPI) microsolver migrations (emodpy_hiv.emod_task.EMODHIVTask attribute) module emodpy_hiv emodpy_hiv.campaign emodpy_hiv.campaign.coc emodpy_hiv.country_data emodpy_hiv.country_data.zambia emodpy_hiv.country_model emodpy_hiv.demographics emodpy_hiv.demographics.assortivity emodpy_hiv.demographics.concurrency_parameters emodpy_hiv.demographics.condom_usage_parameters emodpy_hiv.demographics.country_models emodpy_hiv.demographics.DemographicsTemplates emodpy_hiv.demographics.hiv_demographics emodpy_hiv.demographics.hiv_node emodpy_hiv.demographics.pair_formation_parameters emodpy_hiv.demographics.relationship_parameters emodpy_hiv.demographics.relationship_types emodpy_hiv.demographics.society emodpy_hiv.download emodpy_hiv.emod_task emodpy_hiv.interventions emodpy_hiv.interventions.art emodpy_hiv.interventions.artdropout emodpy_hiv.interventions.artstagingbycd4agnosticdiag emodpy_hiv.interventions.artstagingbycd4diag emodpy_hiv.interventions.cascade_helpers emodpy_hiv.interventions.delay emodpy_hiv.interventions.drawblood emodpy_hiv.interventions.hivmuxer emodpy_hiv.interventions.malecirc emodpy_hiv.interventions.modcoinf emodpy_hiv.interventions.nchooser emodpy_hiv.interventions.outbreak emodpy_hiv.interventions.pmtct emodpy_hiv.interventions.prep emodpy_hiv.interventions.randomchoice emodpy_hiv.interventions.rapiddiag emodpy_hiv.interventions.reftracker emodpy_hiv.interventions.reftrackercoord emodpy_hiv.interventions.setsexualdebut emodpy_hiv.interventions.sigmoiddiag emodpy_hiv.interventions.stipostdebut emodpy_hiv.interventions.utils emodpy_hiv.interventions.yearandsexdiag emodpy_hiv.reporters emodpy_hiv.reporters.builtin emodpy_hiv.utils

monolithic build Monte Carlo method mother-to-child transmission (MTCT)

N

new_delay() (in module emodpy_hiv.interventions.delay) new_diagnostic() (in module emodpy_hiv.interventions.artstagingbycd4agnosticdiag) (in module emodpy_hiv.interventions.artstagingbycd4diag) (in module emodpy_hiv.interventions.drawblood) (in module emodpy_hiv.interventions.randomchoice) (in module emodpy_hiv.interventions.rapiddiag) (in module emodpy_hiv.interventions.sigmoiddiag) (in module emodpy_hiv.interventions.stipostdebut) (in module emodpy_hiv.interventions.yearandsexdiag) new_intervention() (in module emodpy_hiv.interventions.art) (in module emodpy_hiv.interventions.artdropout) (in module emodpy_hiv.interventions.hivmuxer) (in module emodpy_hiv.interventions.malecirc) (in module emodpy_hiv.interventions.modcoinf) (in module emodpy_hiv.interventions.outbreak) (in module emodpy_hiv.interventions.pmtct) (in module emodpy_hiv.interventions.prep) new_intervention_as_file() (in module emodpy_hiv.interventions.art) (in module emodpy_hiv.interventions.artdropout) (in module emodpy_hiv.interventions.artstagingbycd4agnosticdiag) (in module emodpy_hiv.interventions.artstagingbycd4diag) (in module emodpy_hiv.interventions.delay) (in module emodpy_hiv.interventions.drawblood) (in module emodpy_hiv.interventions.malecirc) (in module emodpy_hiv.interventions.modcoinf) (in module emodpy_hiv.interventions.pmtct) (in module emodpy_hiv.interventions.prep) (in module emodpy_hiv.interventions.randomchoice) (in module emodpy_hiv.interventions.rapiddiag) (in module emodpy_hiv.interventions.reftracker) (in module emodpy_hiv.interventions.setsexualdebut) (in module emodpy_hiv.interventions.sigmoiddiag) (in module emodpy_hiv.interventions.stipostdebut) (in module emodpy_hiv.interventions.yearandsexdiag)

new_intervention_event() (in module emodpy_hiv.interventions.art) (in module emodpy_hiv.interventions.artdropout) (in module emodpy_hiv.interventions.artstagingbycd4agnosticdiag) (in module emodpy_hiv.interventions.artstagingbycd4diag) (in module emodpy_hiv.interventions.delay) (in module emodpy_hiv.interventions.drawblood) (in module emodpy_hiv.interventions.malecirc) (in module emodpy_hiv.interventions.modcoinf) (in module emodpy_hiv.interventions.pmtct) (in module emodpy_hiv.interventions.prep) (in module emodpy_hiv.interventions.randomchoice) (in module emodpy_hiv.interventions.rapiddiag) (in module emodpy_hiv.interventions.setsexualdebut) (in module emodpy_hiv.interventions.sigmoiddiag) (in module emodpy_hiv.interventions.stipostdebut) (in module emodpy_hiv.interventions.yearandsexdiag) new_target_distribution() (in module emodpy_hiv.interventions.nchooser) node node properties node-targeted intervention nodes non_schema_checks() (in module emodpy_hiv.utils) nonnucleoside reverse transcriptase inhibitors (NNRTIs) nucleoside reverse transcriptase inhibitors (NRTIs)

O

ON_ART (emodpy_hiv.campaign.coc.CascadeState attribute) ON_ART_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) ON_ART_1 (emodpy_hiv.campaign.coc.CustomEvent attribute) ON_PRE_ART (emodpy_hiv.campaign.coc.CascadeState attribute) (emodpy_hiv.campaign.coc.CustomEvent attribute) ON_PRE_ART_0 (emodpy_hiv.campaign.coc.CustomEvent attribute) ON_PRE_ART_1 (emodpy_hiv.campaign.coc.CustomEvent attribute)

ON_PRE_ART_2 (emodpy_hiv.campaign.coc.CustomEvent attribute) ON_PRE_ART_3 (emodpy_hiv.campaign.coc.CustomEvent attribute) ON_PRE_ART_4 (emodpy_hiv.campaign.coc.CustomEvent attribute) opportunistic infections ordinary differential equation (ODE) origin node output report overlay file

P

pair formation algorithm (PFA) PairFormationParameters (class in emodpy_hiv.demographics.pair_formation_parameters) parameters (emodpy_hiv.reporters.builtin.ReportEventCounter attribute) (emodpy_hiv.reporters.builtin.ReportHumanMigrationTracking attribute) (emodpy_hiv.reporters.builtin.ReportNodeDemographics attribute) (emodpy_hiv.reporters.builtin.ReportRelationshipMigrationTracking attribute) (emodpy_hiv.reporters.builtin.ReportSimulationStats attribute) PEP

PMTCT PrEP prevalence preview protease protease inhibitors proteases py_path_list (emodpy_hiv.emod_task.EMODHIVTask attribute) pyroptosis

R

raw (emodpy_hiv.demographics.hiv_demographics.HIVDemographics property) recovered regression test relationship_types (emodpy_hiv.demographics.society.Society property) RelationshipParameters (class in emodpy_hiv.demographics.relationship_parameters) RelationshipTypes (class in emodpy_hiv.demographics.relationship_types) release reporter reporters (emodpy_hiv.emod_task.EMODHIVTask attribute) ReportEventCounter (class in emodpy_hiv.reporters.builtin)

ReportHumanMigrationTracking (class in emodpy_hiv.reporters.builtin) ReportNodeDemographics (class in emodpy_hiv.reporters.builtin) ReportRelationshipMigrationTracking (class in emodpy_hiv.reporters.builtin) ReportSimulationStats (class in emodpy_hiv.reporters.builtin) reproductive number reset() (in module emodpy_hiv.interventions.cascade_helpers) retrovirus reverse transcriptase ribonuclease routine immunization (RI)

S

scenario schema seed_infection() (in module emodpy_hiv.interventions.cascade_helpers) seed_infections() (emodpy_hiv.country_model.Country method) (in module emodpy_hiv.campaign.coc) (in module emodpy_hiv.interventions.outbreak) SEIR model SEIRS model serodifferent set_concurrency_parameters() (emodpy_hiv.demographics.society.Society method) set_concurrency_params_by_type_and_risk() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) set_fertility() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) set_intervention_properties() (in module emodpy_hiv.interventions.utils) set_mortality() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) set_pair_formation_parameters() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) (emodpy_hiv.demographics.society.Society method) set_relationship_parameters() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) (emodpy_hiv.demographics.society.Society method) set_tvmap_lists_from_map() (in module emodpy_hiv.interventions.utils) SetAgeDistribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) SI model

simulation simulation burn-in simulation type simulation_demographics (emodpy_hiv.emod_task.EMODHIVTask attribute) simulation_migrations (emodpy_hiv.emod_task.EMODHIVTask attribute) SIR model SIRS model SIS model Society (class in emodpy_hiv.demographics.society) solvers SPLIT_REGEX (emodpy_hiv.demographics.country_models.AgeBin attribute) Standard Template Library (STL) state transition event STI_DEBUT (emodpy_hiv.campaign.coc.CustomEvent attribute) stochastic stochastic die-out STR_FORMAT (emodpy_hiv.demographics.country_models.AgeBin attribute) subpatent superinfection supplemental immunization activity (SIA) susceptible

T

TESTING_ON_ANC (emodpy_hiv.campaign.coc.CascadeState attribute) TESTING_ON_CHILD_6W (emodpy_hiv.campaign.coc.CascadeState attribute) TESTING_ON_SYMPTOMATIC (emodpy_hiv.campaign.coc.CascadeState attribute) time step timestep_from_year() (in module emodpy_hiv.campaign.coc) to_dict() (emodpy_hiv.demographics.assortivity.Assortivity method) (emodpy_hiv.demographics.concurrency_parameters.ConcurrencyParameters method) (emodpy_hiv.demographics.condom_usage_parameters.CondomUsageParameters method) (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) (emodpy_hiv.demographics.hiv_node.HIVNode method) (emodpy_hiv.demographics.pair_formation_parameters.PairFormationParameters method) (emodpy_hiv.demographics.relationship_parameters.RelationshipParameters method) (emodpy_hiv.demographics.society.Society method)

to_tuple() (emodpy_hiv.demographics.country_models.AgeBin method) track_sexual_debut_intervention() (in module emodpy_hiv.interventions.setsexualdebut) transitory (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) transmissibility (\beta) trigger_art() (in module emodpy_hiv.interventions.cascade_helpers) trigger_art_from_pos_test() (in module emodpy_hiv.interventions.cascade_helpers) triggered_event_common() (in module emodpy_hiv.interventions.cascade_helpers) tutorial

V

vertical transmission viral load

virion virulence

W

WAIFW matrix

Weibull distribution working directory

Z

Zambia (class in emodpy_hiv.country_model)