Index

A

AbstractTargetingConfig (class in emodpy_hiv.utils.targeting_config) AbstractWaningConfig (class in emodpy_hiv.campaign.waning_config) AcquisitionBlocking (emodpy_hiv.utils.emod_enum.VaccineType attribute) add_ART_cascade() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_ART_cascade_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_channel() (emodpy_hiv.plotting.channel_report.ChannelReport method) add_csw() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_csw_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_health_care_testing() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_health_care_testing_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_historical_vmmc_nchooser() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_intervention_nchooser_df() (in module emodpy_hiv.campaign.distributor) add_intervention_reference_tracking() (in module emodpy_hiv.campaign.distributor) add_intervention_scheduled() (in module emodpy_hiv.campaign.distributor) add_intervention_triggered() (in module emodpy_hiv.campaign.distributor) add_male_circumcision_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_or_update_initial_cascade_state_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) add_or_update_initial_health_care_accessibility_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) add_or_update_initial_risk_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) add_pmtct() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_pmtct_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_post_debut_coinfection() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_post_debut_coinfection_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_seed_infections_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) add_state_ARTStaging() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_ARTStagingDiagnosticTest() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_HCTTestingLoop() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_HCTUptakeAtDebut() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_HCTUptakePostDebut() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_LinkingToART() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_LinkingToPreART() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care)

add_state_LostForever() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_OnART() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_OnPreART() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_TestingOnANC() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_TestingOnChild6w() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_state_TestingOnSymptomatic() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_traditional_male_circumcision() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) add_vmmc_reference_tracking() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) AddIndividualPropertyAndHINT() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) AgeDiagnostic (class in emodpy_hiv.campaign.individual_intervention) agent-based model Air_Temperature (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) ALL (emodpy_hiv.campaign.common.TargetGender attribute) antibodies antibody antigen antigens AntiretroviralTherapy (class in emodpy_hiv.campaign.individual_intervention) AntiretroviralTherapyFull (class in emodpy_hiv.campaign.individual_intervention) apoptosis ART ART_STAGING (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_1 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_2 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_3 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_4 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_5 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_6 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_8 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_9 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ART_STAGING_DIAGNOSTIC_TEST (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) ARTDropout (class in emodpy_hiv.campaign.individual_intervention) Assortivity (class in emodpy_hiv.demographics.assortivity)

B

base_plot_by_age() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) base_year (emodpy_hiv.country_model.Country attribute) BaseDistribution (class in emodpy_hiv.utils.distributions) BaseTargetingConfig (class in emodpy_hiv.utils.targeting_config) BaseWaningConfig (class in emodpy_hiv.campaign.waning_config) BIMODAL_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) BimodalDistribution (class in emodpy_hiv.utils.distributions) Births (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) Boost Box (class in emodpy_hiv.campaign.waning_config)

boxcar function BoxExponential (class in emodpy_hiv.campaign.waning_config) BroadcastEvent (class in emodpy_hiv.campaign.individual_intervention) BroadcastEventToOtherNodes (class in emodpy_hiv.campaign.individual_intervention) BroadcastNodeEvent (class in emodpy_hiv.campaign.node_intervention) BROKE_UP (emodpy_hiv.utils.targeting_config.RelationshipTerminationReasonType attribute) build_campaign() (emodpy_hiv.country_model.Country class method) build_config() (emodpy_hiv.country_model.Country class method) build_demographics() (emodpy_hiv.country_model.Country class method) build_reports() (emodpy_hiv.countries.zambia.zambia.Zambia class method) (emodpy_hiv.country_model.Country class method)

C

calculate_mean() (in module emodpy_hiv.plotting.plot_inset_chart_mean_compare) campaign campaign event campaign file Campaign_Cost (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) capsid CascadeState (class in emodpy_hiv.campaign.cascade_of_care) CD4 cells CD4Diagnostic (class in emodpy_hiv.campaign.individual_intervention) cell-mediated immunity channel ChannelReport (class in emodpy_hiv.plotting.channel_report) check_value_ranges() (emodpy_hiv.campaign.individual_intervention.Sigmoid method) CHOSEN_AT_RANDOM (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute) class factory Clausius-Clayperon relation coital dilution CoitalActRiskFactors (class in emodpy_hiv.campaign.individual_intervention) COL_NAME_MIN_AGE (emodpy_hiv.demographics.year_age_rate.YearAgeRate attribute) COL_NAME_MIN_YEAR (emodpy_hiv.demographics.year_age_rate.YearAgeRate attribute) COL_NAME_NODE_ID (emodpy_hiv.demographics.year_age_rate.YearAgeRate attribute) COL_NAME_RATE (emodpy_hiv.demographics.year_age_rate.YearAgeRate attribute) COL_NAMES (emodpy_hiv.demographics.year_age_rate.YearAgeRate attribute) Combo (class in emodpy_hiv.campaign.waning_config) commercial (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) COMMERCIAL (emodpy_hiv.reporters.reporters.RelationshipType attribute) (emodpy_hiv.utils.emod_enum.RelationshipType attribute) (emodpy_hiv.utils.targeting_config.OfRelationshipType attribute) COMMERCIAL_DELAY_FROM_DEBUT_UPTAKE (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) COMMERCIAL_DROPOUT (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) COMMERCIAL_UPTAKE (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) CommonInterventionParameters (class in emodpy_hiv.campaign.common) compare_campaign_event() (in module emodpy_hiv.countries.converting.campaign_sort) compare_event_coordinator() (in module emodpy_hiv.countries.converting.campaign_sort) compare_intervention_config() (in module emodpy_hiv.countries.converting.campaign_sort)

compare_intervention_name() (in module emodpy_hiv.countries.converting.campaign_sort) compare_nchooser() (in module emodpy_hiv.countries.converting.campaign_sort) compare_node_set() (in module emodpy_hiv.countries.converting.campaign_sort) compare_sec() (in module emodpy_hiv.countries.converting.campaign_sort) compare_tracker() (in module emodpy_hiv.countries.converting.campaign_sort) compartmental model ConcurrencyParameters (class in emodpy_hiv.demographics.concurrency_parameters) CondomUsageParameters (class in emodpy_hiv.demographics.condom_usage_parameters) CondomUsageParametersType (class in emodpy_hiv.utils.emod_enum) Config (emodpy_hiv.utils.emod_enum.EventOrConfig attribute) configuration file Constant (class in emodpy_hiv.campaign.waning_config) CONSTANT_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) ConstantDistribution (class in emodpy_hiv.utils.distributions) ControlledVaccine (class in emodpy_hiv.campaign.individual_intervention) convert_DelayedIntervention() (in module emodpy_hiv.countries.converting.campaign_sort) convert_df_to_channel_report() (emodpy_hiv.plotting.channel_report.ChannelReport method) convert_time_value_map() (in module emodpy_hiv.campaign.cascade_of_care) convert_to_df() (emodpy_hiv.plotting.channel_report.ChannelReport static method) core COUNT (emodpy_hiv.reporters.reporters.RelationshipType attribute) (emodpy_hiv.utils.emod_enum.RelationshipType attribute) Country (class in emodpy_hiv.country_model) country_name (emodpy_hiv.countries.zambia.zambia.Zambia attribute) (emodpy_hiv.country_model.Country attribute) create_common_x_values() (in module emodpy_hiv.plotting.xy_plot) create_df_for_plot_by_age() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) create_df_for_plot_by_stratification() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) create_empty_channel_report() (emodpy_hiv.plotting.channel_report.ChannelReport method) create_old_demographic_files() (in module emodpy_hiv.countries.converting.new_demographics_old_format) create_title() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) create_title_string() (in module emodpy_hiv.plotting.plot_inset_chart) create_y_axis_name() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) CURRENT_AGE (emodpy_hiv.utils.emod_enum.SettingType attribute) CustomEvent (class in emodpy_hiv.campaign.cascade_of_care)

D

DelayedIntervention (class in emodpy_hiv.campaign.individual_intervention) demographics file DemographicsReport (class in emodpy_hiv.reporters.reporters) dendritic cell destination node deterministic diffusive migration disability-adjusted life years (DALY) disease-specific build

Disease_Deaths (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) DISTANCE_AND_MIGRATION (emodpy_hiv.utils.emod_enum.NodeSelectionType attribute) DISTANCE_ONLY (emodpy_hiv.utils.emod_enum.NodeSelectionType attribute) DistributionType (class in emodpy_hiv.utils.emod_enum) download() (in module emodpy_hiv.download) DUAL_CONSTANT_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) DUAL_EXPONENTIAL_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) DualConstantDistribution (class in emodpy_hiv.utils.distributions) DualExponentialDistribution (class in emodpy_hiv.utils.distributions) dynamic link library (DLL)

E

emodpy_hiv module emodpy_hiv.campaign module emodpy_hiv.campaign.cascade_of_care module emodpy_hiv.campaign.common module emodpy_hiv.campaign.distributor module emodpy_hiv.campaign.event_coordinator module emodpy_hiv.campaign.individual_intervention module emodpy_hiv.campaign.node_intervention module emodpy_hiv.campaign.waning_config module emodpy_hiv.countries module emodpy_hiv.countries.converting module emodpy_hiv.countries.converting.campaign_sort module emodpy_hiv.countries.converting.new_demographics_old_format module emodpy_hiv.countries.converting.reformat_json module emodpy_hiv.countries.un_world_pop_data module emodpy_hiv.countries.zambia module emodpy_hiv.countries.zambia.zambia module emodpy_hiv.country_model module emodpy_hiv.demographics module emodpy_hiv.demographics.assortivity module emodpy_hiv.demographics.concurrency_parameters module emodpy_hiv.demographics.condom_usage_parameters module emodpy_hiv.demographics.DemographicsTemplates module emodpy_hiv.demographics.hiv_demographics module emodpy_hiv.demographics.hiv_node module emodpy_hiv.demographics.infer_natural_mortality module emodpy_hiv.demographics.library module emodpy_hiv.demographics.pair_formation_parameters module emodpy_hiv.demographics.relationship_parameters module emodpy_hiv.demographics.relationship_types module emodpy_hiv.demographics.risk_groups module emodpy_hiv.demographics.society module emodpy_hiv.demographics.un_world_pop module emodpy_hiv.demographics.year_age_rate module

emodpy_hiv.download module emodpy_hiv.parameterized_call module emodpy_hiv.plotting module emodpy_hiv.plotting.channel_report module emodpy_hiv.plotting.helpers module emodpy_hiv.plotting.plot_a_vs_b module emodpy_hiv.plotting.plot_hiv_by_age_and_gender module emodpy_hiv.plotting.plot_inset_chart module emodpy_hiv.plotting.plot_inset_chart_mean_compare module emodpy_hiv.plotting.plot_relationship_end module emodpy_hiv.plotting.plot_relationship_start module emodpy_hiv.plotting.xy_plot module emodpy_hiv.reporters module emodpy_hiv.reporters.reporters module emodpy_hiv.utils module emodpy_hiv.utils.config_utils module emodpy_hiv.utils.distributions module emodpy_hiv.utils.emod_enum module emodpy_hiv.utils.targeting_config module EMODule ENDED (emodpy_hiv.utils.targeting_config.RecentlyType attribute) entry inhibitors epidemic Epidemiological MODeling software (EMOD) epitope Eradication.exe Euler method Event (emodpy_hiv.utils.emod_enum.EventOrConfig attribute) event coordinator EventOrConfig (class in emodpy_hiv.utils.emod_enum) exp( Exponential (class in emodpy_hiv.campaign.waning_config) EXPONENTIAL_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) ExponentialDistribution (class in emodpy_hiv.utils.distributions) exposed extract_assortivity_risk() (in module emodpy_hiv.plotting.plot_relationship_start) extract_data_for_relationship() (in module emodpy_hiv.plotting.plot_relationship_end) extract_fertility() (in module emodpy_hiv.demographics.un_world_pop) extract_mortality() (in module emodpy_hiv.demographics.un_world_pop) extract_population_by_age() (in module emodpy_hiv.demographics.un_world_pop) extract_population_by_age_and_distribution() (in module emodpy_hiv.demographics.un_world_pop) extract_population_by_age_for_ingest_form() (in module emodpy_hiv.demographics.un_world_pop) extract_population_data() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) extract_population_data_by_stratification() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) extract_population_data_by_stratification_for_dir() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) extract_population_data_multiple_ages() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) extract_population_data_multiple_ages_for_dir() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender)

F

FEMALE (emodpy_hiv.campaign.common.TargetGender attribute) FemaleContraceptive (class in emodpy_hiv.campaign.individual_intervention) fill_in_y_values() (in module emodpy_hiv.plotting.xy_plot) fix_nchooser_number_format() (in module emodpy_hiv.countries.converting.campaign_sort) flattened file force of infection (FoI) format_sort_round_json() (in module emodpy_hiv.countries.converting.reformat_json) from_dict() (emodpy_hiv.demographics.assortivity.Assortivity class method) (emodpy_hiv.demographics.concurrency_parameters.ConcurrencyParameters class method) (emodpy_hiv.demographics.condom_usage_parameters.CondomUsageParameters class method) (emodpy_hiv.demographics.pair_formation_parameters.PairFormationParameters class method) (emodpy_hiv.demographics.relationship_parameters.RelationshipParameters class method) (emodpy_hiv.demographics.society.Society class method)

from_params() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_pop_csv() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_population_dataframe() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_template_node() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method) from_year_age_rate_data() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics class method)

G

GAUSSIAN_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) GaussianDistribution (class in emodpy_hiv.utils.distributions) generate_label() (emodpy_hiv.country_model.Country static method) Generic (emodpy_hiv.utils.emod_enum.VaccineType attribute) get_campaign_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) (emodpy_hiv.country_model.Country class method) get_color_name() (in module emodpy_hiv.plotting.plot_inset_chart) (in module emodpy_hiv.plotting.xy_plot) get_concurrency_parameters_by_relationship_type_and_risk() (emodpy_hiv.demographics.society.Society method) get_config_parameterized_calls() (emodpy_hiv.country_model.Country class method) get_country_class() (in module emodpy_hiv.country_model) get_data_from_directory() (in module emodpy_hiv.plotting.plot_inset_chart) get_demographic_distribution_parameters() (emodpy_hiv.utils.distributions.BaseDistribution method) (emodpy_hiv.utils.distributions.BimodalDistribution method) (emodpy_hiv.utils.distributions.ConstantDistribution method) (emodpy_hiv.utils.distributions.DualConstantDistribution method) (emodpy_hiv.utils.distributions.DualExponentialDistribution method) (emodpy_hiv.utils.distributions.ExponentialDistribution method) (emodpy_hiv.utils.distributions.GaussianDistribution method) (emodpy_hiv.utils.distributions.LogNormalDistribution method) (emodpy_hiv.utils.distributions.PoissonDistribution method) (emodpy_hiv.utils.distributions.UniformDistribution method) (emodpy_hiv.utils.distributions.WeibullDistribution method)

get_demographics_parameterized_calls() (emodpy_hiv.countries.zambia.zambia.Zambia class method) (emodpy_hiv.country_model.Country class method) get_filenames() (in module emodpy_hiv.plotting.helpers) get_line_style() (in module emodpy_hiv.plotting.xy_plot) get_list_of_channels() (in module emodpy_hiv.plotting.plot_inset_chart) get_marker_style() (in module emodpy_hiv.plotting.xy_plot) get_old_demographic_filenames() (in module emodpy_hiv.countries.converting.new_demographics_old_format) get_pair_formation_parameters_by_relationship_type() (emodpy_hiv.demographics.society.Society method) get_raw_color() (in module emodpy_hiv.plotting.plot_inset_chart) get_relationship_parameters_by_relationship_type() (emodpy_hiv.demographics.society.Society method) get_society_dict() (in module emodpy_hiv.demographics.DemographicsTemplates) glycoproteins gp120 gp41

H

HAS_INTERVENTION (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) HasBeenOnArtMoreOrLessThanNumMonths (class in emodpy_hiv.utils.targeting_config) HasCd4BetweenMinAndMax (class in emodpy_hiv.utils.targeting_config) HasHadMultiplePartnersInLastNumMonths (class in emodpy_hiv.utils.targeting_config) HasIntervention (class in emodpy_hiv.utils.targeting_config) HasIP (class in emodpy_hiv.utils.targeting_config) HasMoreOrLessThanNumPartners (class in emodpy_hiv.utils.targeting_config) HasRelationship (class in emodpy_hiv.utils.targeting_config) HCT_TESTING_LOOP (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_TESTING_LOOP_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_TESTING_LOOP_1 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_TESTING_LOOP_2 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_UPTAKE_AT_DEBUT (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) HCT_UPTAKE_POST_DEBUT (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) HCT_UPTAKE_POST_DEBUT_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_1 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_2 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_3 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_7 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute)

HCT_UPTAKE_POST_DEBUT_8 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) HCT_UPTAKE_POST_DEBUT_9 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) helper T-cells herd immunity Heterogeneous Intra-Node Transmission (HINT) high (emodpy_hiv.demographics.risk_groups.RiskGroups attribute) high-performance computing (HPC) HIV_NEGATIVE (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) HIV_POSITIVE (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) HIVARTStagingByCD4Diagnostic (class in emodpy_hiv.campaign.individual_intervention) HIVARTStagingCD4AgnosticDiagnostic (class in emodpy_hiv.campaign.individual_intervention) HIVDemographics (class in emodpy_hiv.demographics.hiv_demographics) HIVDrawBlood (class in emodpy_hiv.campaign.individual_intervention) HIVMuxer (class in emodpy_hiv.campaign.individual_intervention) HIVNode (class in emodpy_hiv.demographics.hiv_node) HIVPiecewiseByYearAndSexDiagnostic (class in emodpy_hiv.campaign.individual_intervention) HIVRandomChoice (class in emodpy_hiv.campaign.individual_intervention) HIVRapidHIVDiagnostic (class in emodpy_hiv.campaign.individual_intervention) HIVSigmoidByYearAndSexDiagnostic (class in emodpy_hiv.campaign.individual_intervention) home node Human_Infectious_Reservoir (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute)

I

immune ImportPressure (class in emodpy_hiv.campaign.node_intervention) incidence individual properties IndividualImmunityChanger (class in emodpy_hiv.campaign.individual_intervention) IndividualNonDiseaseDeathRateModifier (class in emodpy_hiv.campaign.individual_intervention) Infected (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) infectious infer_natural_mortality() (in module emodpy_hiv.demographics.infer_natural_mortality) informal (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) INFORMAL (emodpy_hiv.reporters.reporters.RelationshipType attribute) (emodpy_hiv.utils.emod_enum.RelationshipType attribute) (emodpy_hiv.utils.targeting_config.OfRelationshipType attribute) initialize_campaign() (emodpy_hiv.countries.zambia.zambia.Zambia class method) (emodpy_hiv.country_model.Country class method) initialize_config() (emodpy_hiv.countries.zambia.zambia.Zambia class method) (emodpy_hiv.country_model.Country class method)

initialize_demographics() (emodpy_hiv.countries.zambia.zambia.Zambia class method) (emodpy_hiv.country_model.Country class method) input files inset chart InsetChart (class in emodpy_hiv.reporters.reporters) integrase integrase inhibitors intervention InterventionForCurrentPartners (class in emodpy_hiv.campaign.individual_intervention) IsCircumcised (class in emodpy_hiv.utils.targeting_config) IsHivPositive (class in emodpy_hiv.utils.targeting_config) IsOnART (class in emodpy_hiv.utils.targeting_config) IsPostDebut (class in emodpy_hiv.utils.targeting_config) IsPregnant (class in emodpy_hiv.utils.targeting_config) IVCalendar (class in emodpy_hiv.campaign.individual_intervention) IVCalendar.AgeAndProbability (class in emodpy_hiv.campaign.individual_intervention)

J

JSON (JavaScript Object Notation)

K

Keyhole Markup Language (KML)

Koppen-Geiger Climate Classification System

L

labeled_hyperparameters (emodpy_hiv.parameterized_call.ParameterizedCall property) lentivirus LESS (emodpy_hiv.utils.targeting_config.MoreOrLess attribute) Link-Time Code Generation (LTCG) LINKING_TO_ART (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) LINKING_TO_ART_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) LINKING_TO_PRE_ART (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) LINKING_TO_PRE_ART_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) load_nchooser_distribution_data() (emodpy_hiv.country_model.Country static method)

LOG_NORMAL_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) LogNormalDistribution (class in emodpy_hiv.utils.distributions) LONGER_TIME_IN_RELATIONSHIP (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute) loss to follow-up (LTFU) LOST_FOREVER (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) LOST_FOREVER_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) LOST_FOREVER_9 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) low (emodpy_hiv.demographics.risk_groups.RiskGroups attribute) LTFU

M

MALE (emodpy_hiv.campaign.common.TargetGender attribute) MALE_CIRCUMCISION_NEGATIVE (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) MALE_CIRCUMCISION_POSITIVE (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) MaleCircumcision (class in emodpy_hiv.campaign.individual_intervention) MapLinear (class in emodpy_hiv.campaign.waning_config) MapLinearAge (class in emodpy_hiv.campaign.waning_config) MapLinearSeasonal (class in emodpy_hiv.campaign.waning_config) MapPiecewise (class in emodpy_hiv.campaign.waning_config) marital (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) MARITAL (emodpy_hiv.reporters.reporters.RelationshipType attribute) (emodpy_hiv.utils.emod_enum.RelationshipType attribute) (emodpy_hiv.utils.targeting_config.OfRelationshipType attribute) medium (emodpy_hiv.demographics.risk_groups.RiskGroups attribute) Message Passing Interface (MPI) microsolver MigrateFamily (class in emodpy_hiv.campaign.node_intervention) MigrateIndividuals (class in emodpy_hiv.campaign.individual_intervention) MIGRATION_NODES_ONLY (emodpy_hiv.utils.emod_enum.NodeSelectionType attribute) ModifyStiCoInfectionStatus (class in emodpy_hiv.campaign.individual_intervention) module emodpy_hiv emodpy_hiv.campaign emodpy_hiv.campaign.cascade_of_care emodpy_hiv.campaign.common emodpy_hiv.campaign.distributor emodpy_hiv.campaign.event_coordinator emodpy_hiv.campaign.individual_intervention emodpy_hiv.campaign.node_intervention emodpy_hiv.campaign.waning_config emodpy_hiv.countries emodpy_hiv.countries.converting emodpy_hiv.countries.converting.campaign_sort emodpy_hiv.countries.converting.new_demographics_old_format emodpy_hiv.countries.converting.reformat_json emodpy_hiv.countries.un_world_pop_data emodpy_hiv.countries.zambia emodpy_hiv.countries.zambia.zambia emodpy_hiv.country_model emodpy_hiv.demographics emodpy_hiv.demographics.assortivity emodpy_hiv.demographics.concurrency_parameters emodpy_hiv.demographics.condom_usage_parameters emodpy_hiv.demographics.DemographicsTemplates emodpy_hiv.demographics.hiv_demographics emodpy_hiv.demographics.hiv_node emodpy_hiv.demographics.infer_natural_mortality emodpy_hiv.demographics.library emodpy_hiv.demographics.pair_formation_parameters emodpy_hiv.demographics.relationship_parameters emodpy_hiv.demographics.relationship_types emodpy_hiv.demographics.risk_groups emodpy_hiv.demographics.society emodpy_hiv.demographics.un_world_pop emodpy_hiv.demographics.year_age_rate emodpy_hiv.download emodpy_hiv.parameterized_call emodpy_hiv.plotting emodpy_hiv.plotting.channel_report emodpy_hiv.plotting.helpers emodpy_hiv.plotting.plot_a_vs_b emodpy_hiv.plotting.plot_hiv_by_age_and_gender emodpy_hiv.plotting.plot_inset_chart emodpy_hiv.plotting.plot_inset_chart_mean_compare emodpy_hiv.plotting.plot_relationship_end emodpy_hiv.plotting.plot_relationship_start emodpy_hiv.plotting.xy_plot emodpy_hiv.reporters emodpy_hiv.reporters.reporters emodpy_hiv.utils emodpy_hiv.utils.config_utils emodpy_hiv.utils.distributions emodpy_hiv.utils.emod_enum emodpy_hiv.utils.targeting_config

monolithic build Monte Carlo method MORE (emodpy_hiv.utils.targeting_config.MoreOrLess attribute) MoreOrLess (class in emodpy_hiv.utils.targeting_config) mortality_read_infer_plot() (in module emodpy_hiv.demographics.infer_natural_mortality) mortality_read_infer_plot_app() (in module emodpy_hiv.demographics.infer_natural_mortality) MortalityBlocking (emodpy_hiv.utils.emod_enum.VaccineType attribute) mother-to-child transmission (MTCT) MultiEffectBoosterVaccine (class in emodpy_hiv.campaign.individual_intervention) MultiEffectVaccine (class in emodpy_hiv.campaign.individual_intervention) MultiInterventionDistributor (class in emodpy_hiv.campaign.individual_intervention) MultiNodeInterventionDistributor (class in emodpy_hiv.campaign.node_intervention)

N

NA (emodpy_hiv.utils.targeting_config.OfRelationshipType attribute) (emodpy_hiv.utils.targeting_config.RecentlyType attribute) (emodpy_hiv.utils.targeting_config.RelationshipTerminationReasonType attribute) (emodpy_hiv.utils.targeting_config.YesNoNa attribute) NChooserEventCoordinatorHIV (class in emodpy_hiv.campaign.event_coordinator) NChooserTargetedDistributionHIV (class in emodpy_hiv.campaign.common) New_Infections (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) New_Reported_Infections (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) NINE_MONTHS (emodpy_hiv.utils.targeting_config.NumMonthsType attribute) NO (emodpy_hiv.utils.targeting_config.YesNoNa attribute) NO_PRIORITIZATION (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute)

node node properties node-targeted intervention NodePropertyValueChanger (class in emodpy_hiv.campaign.node_intervention) nodes NodeSelectionType (class in emodpy_hiv.utils.emod_enum) non_schema_checks() (in module emodpy_hiv.utils.config_utils) nonnucleoside reverse transcriptase inhibitors (NNRTIs) NOT_HAVE_INTERVENTION (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) NOT_INITIALIZED (emodpy_hiv.utils.emod_enum.DistributionType attribute) nucleoside reverse transcriptase inhibitors (NRTIs) NumMonthsType (class in emodpy_hiv.utils.targeting_config)

O

OfRelationshipType (class in emodpy_hiv.utils.targeting_config) OLDER_AGE (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute) ON_ART (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) ON_ART_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ON_ART_1 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ON_PRE_ART (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ON_PRE_ART_0 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ON_PRE_ART_1 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute)

ON_PRE_ART_2 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ON_PRE_ART_3 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) ON_PRE_ART_4 (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) opportunistic infections ordinary differential equation (ODE) origin node Outbreak (class in emodpy_hiv.campaign.node_intervention) OutbreakIndividual (class in emodpy_hiv.campaign.individual_intervention) output report overlay file

P

pair formation algorithm (PFA) PairFormationParameters (class in emodpy_hiv.demographics.pair_formation_parameters) ParameterizedCall (class in emodpy_hiv.parameterized_call) PARTNER_DIED (emodpy_hiv.utils.targeting_config.RelationshipTerminationReasonType attribute) PARTNER_MIGRATING (emodpy_hiv.utils.targeting_config.RelationshipTerminationReasonType attribute) PARTNER_TERMINATED (emodpy_hiv.utils.targeting_config.RelationshipTerminationReasonType attribute) PEP plot() (in module emodpy_hiv.demographics.year_age_rate) plot_circumcision_by_age() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_columns() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_csv_a_vs_b() (in module emodpy_hiv.plotting.plot_a_vs_b) plot_data() (in module emodpy_hiv.plotting.plot_inset_chart) plot_inset_chart() (in module emodpy_hiv.plotting.plot_inset_chart) plot_mean() (in module emodpy_hiv.plotting.plot_inset_chart_mean_compare) plot_onART_by_age() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_population_by_age() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_population_by_age_vs_unworld_pop() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_population_by_gender() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_population_by_ip() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_population_for_dir() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_prevalence_for_dir() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_relationship_assortivity_risk() (in module emodpy_hiv.plotting.plot_relationship_start) plot_relationship_assortivity_risk_all() (in module emodpy_hiv.plotting.plot_relationship_start) plot_relationship_duration_histogram() (in module emodpy_hiv.plotting.plot_relationship_end)

plot_relationship_duration_histogram_with_expected() (in module emodpy_hiv.plotting.plot_relationship_end) plot_risk() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_risk_zambia() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_subplot() (in module emodpy_hiv.plotting.plot_inset_chart) plot_vmmc_by_age() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) plot_vmmc_for_dir() (in module emodpy_hiv.plotting.plot_hiv_by_age_and_gender) PMTCT (class in emodpy_hiv.campaign.individual_intervention) POISSON_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) PoissonDistribution (class in emodpy_hiv.utils.distributions) Population (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) PrEP prepare_call() (emodpy_hiv.parameterized_call.ParameterizedCall method) prevalence Prevalence (emodpy_hiv.reporters.reporters.SpatialReportChannels attribute) preview PrioritizePartnersBy (class in emodpy_hiv.utils.emod_enum) PropertyReport (class in emodpy_hiv.reporters.reporters) PropertyRestrictions (class in emodpy_hiv.campaign.common) PropertyValueChanger (class in emodpy_hiv.campaign.individual_intervention) protease protease inhibitors proteases pyroptosis

R

RandomBox (class in emodpy_hiv.campaign.waning_config) RangeThreshold (class in emodpy_hiv.campaign.individual_intervention) raw (emodpy_hiv.demographics.hiv_demographics.HIVDemographics property) RecentlyType (class in emodpy_hiv.utils.targeting_config) recovered ReferenceTrackingEventCoordinatorTrackingConfig (class in emodpy_hiv.campaign.event_coordinator) regression test RELATIONSHIP_TYPE (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute) relationship_types (emodpy_hiv.demographics.society.Society property) RelationshipParameters (class in emodpy_hiv.demographics.relationship_parameters) RelationshipTerminationReasonType (class in emodpy_hiv.utils.targeting_config) RelationshipType (class in emodpy_hiv.reporters.reporters) (class in emodpy_hiv.utils.emod_enum) RelationshipTypes (class in emodpy_hiv.demographics.relationship_types) release remove_defaults() (in module emodpy_hiv.countries.converting.campaign_sort) remove_defaults_from_intervention() (in module emodpy_hiv.countries.converting.campaign_sort) remove_defaults_from_sec() (in module emodpy_hiv.countries.converting.campaign_sort) remove_defaults_from_xxx_target_demographic() (in module emodpy_hiv.countries.converting.campaign_sort) RepetitionConfig (class in emodpy_hiv.campaign.common) ReportCoitalActs (class in emodpy_hiv.reporters.reporters) ReportCoordinatorEventRecorder (class in emodpy_hiv.reporters.reporters) reporter ReportEventCounter (class in emodpy_hiv.reporters.reporters) ReportEventRecorder (class in emodpy_hiv.reporters.reporters)

ReportFilter (class in emodpy_hiv.reporters.reporters) ReportHIVART (class in emodpy_hiv.reporters.reporters) ReportHIVByAgeAndGender (class in emodpy_hiv.reporters.reporters) ReportHIVInfection (class in emodpy_hiv.reporters.reporters) ReportHIVMortality (class in emodpy_hiv.reporters.reporters) ReportHumanMigrationTracking (class in emodpy_hiv.reporters.reporters) ReportInfectionDuration (class in emodpy_hiv.reporters.reporters) ReportNodeDemographics (class in emodpy_hiv.reporters.reporters) ReportNodeEventRecorder (class in emodpy_hiv.reporters.reporters) ReportPfaQueues (class in emodpy_hiv.reporters.reporters) ReportPluginAgeAtInfection (class in emodpy_hiv.reporters.reporters) ReportPluginAgeAtInfectionHistogram (class in emodpy_hiv.reporters.reporters) ReportRelationshipCensus (class in emodpy_hiv.reporters.reporters) ReportRelationshipEnd (class in emodpy_hiv.reporters.reporters) ReportRelationshipMigrationTracking (class in emodpy_hiv.reporters.reporters) ReportRelationshipStart (class in emodpy_hiv.reporters.reporters) ReportSimulationStats (class in emodpy_hiv.reporters.reporters) ReportSurveillanceEventRecorder (class in emodpy_hiv.reporters.reporters) ReportTransmission (class in emodpy_hiv.reporters.reporters) reproductive number retrovirus reverse transcriptase ribonuclease RiskGroups (class in emodpy_hiv.demographics.risk_groups) routine immunization (RI)

S

save() (emodpy_hiv.plotting.channel_report.ChannelReport method) scenario schema seed_infections() (emodpy_hiv.country_model.Country class method) (in module emodpy_hiv.campaign.cascade_of_care) SEIR model SEIRS model SELF_MIGRATING (emodpy_hiv.utils.targeting_config.RelationshipTerminationReasonType attribute) SensitivityType (class in emodpy_hiv.utils.emod_enum) serodifferent set_concurrency_parameters() (emodpy_hiv.demographics.society.Society method) (in module emodpy_hiv.demographics.library) set_concurrency_params_by_type_and_risk() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) set_fertility_distribution() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) set_initial_cascade_state_distribution() (in module emodpy_hiv.demographics.library) set_initial_health_care_accessibility_distribution() (in module emodpy_hiv.demographics.library) set_initial_risk_distribution() (in module emodpy_hiv.demographics.library) set_intervention_distribution() (emodpy_hiv.utils.distributions.BaseDistribution method) (emodpy_hiv.utils.distributions.BimodalDistribution method) (emodpy_hiv.utils.distributions.ConstantDistribution method) (emodpy_hiv.utils.distributions.DualConstantDistribution method) (emodpy_hiv.utils.distributions.DualExponentialDistribution method) (emodpy_hiv.utils.distributions.ExponentialDistribution method) (emodpy_hiv.utils.distributions.GaussianDistribution method) (emodpy_hiv.utils.distributions.LogNormalDistribution method) (emodpy_hiv.utils.distributions.PoissonDistribution method) (emodpy_hiv.utils.distributions.UniformDistribution method) (emodpy_hiv.utils.distributions.WeibullDistribution method) set_labeled_hyperparameter() (emodpy_hiv.parameterized_call.ParameterizedCall method) set_pair_formation_parameters() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) (emodpy_hiv.demographics.society.Society method) (in module emodpy_hiv.demographics.library) set_relationship_parameters() (emodpy_hiv.demographics.hiv_demographics.HIVDemographics method) (emodpy_hiv.demographics.society.Society method) (in module emodpy_hiv.demographics.library) SetSexualDebutAge (class in emodpy_hiv.campaign.individual_intervention) SettingType (class in emodpy_hiv.utils.emod_enum) SHORTER_TIME_IN_RELATIONSHIP (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute)

SI model Sigmoid (class in emodpy_hiv.campaign.individual_intervention) SimpleBoosterVaccine (class in emodpy_hiv.campaign.individual_intervention) SimpleVaccine (class in emodpy_hiv.campaign.individual_intervention) simulation simulation burn-in simulation type SINGLE_VALUE (emodpy_hiv.utils.emod_enum.SensitivityType attribute) SIR model SIRS model SIS model SIX_MONTHS (emodpy_hiv.utils.targeting_config.NumMonthsType attribute) Society (class in emodpy_hiv.demographics.society) solvers SORT_BY_COLUMNS (emodpy_hiv.demographics.year_age_rate.YearAgeRate attribute) sort_campaign() (in module emodpy_hiv.countries.converting.campaign_sort) sort_campaign_file() (in module emodpy_hiv.countries.converting.campaign_sort) sort_names_and_probabilities() (in module emodpy_hiv.countries.converting.campaign_sort) SpatialReport (class in emodpy_hiv.reporters.reporters) SpatialReportChannels (class in emodpy_hiv.reporters.reporters) SPECIFY_USAGE (emodpy_hiv.utils.emod_enum.CondomUsageParametersType attribute) SqlReport (class in emodpy_hiv.reporters.reporters) Standard Template Library (STL) StandardDiagnostic (class in emodpy_hiv.campaign.individual_intervention) StandardEventCoordinator (class in emodpy_hiv.campaign.event_coordinator) STARTED (emodpy_hiv.utils.targeting_config.RecentlyType attribute) StartNewRelationship (class in emodpy_hiv.campaign.individual_intervention) state transition event STI_DEBUT (emodpy_hiv.campaign.cascade_of_care.CustomEvent attribute) STIBarrier (class in emodpy_hiv.campaign.individual_intervention) STIIsPostDebut (class in emodpy_hiv.campaign.individual_intervention) stochastic stochastic die-out StrEnum (class in emodpy_hiv.utils.emod_enum) subpatent superinfection supplemental immunization activity (SIA) susceptible

T

TargetDemographicsConfig (class in emodpy_hiv.campaign.common) TargetDiseaseState (class in emodpy_hiv.utils.emod_enum) TargetGender (class in emodpy_hiv.campaign.common) TESTED_NEGATIVE (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) TESTED_POSITIVE (emodpy_hiv.utils.emod_enum.TargetDiseaseState attribute) TESTING_ON_ANC (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) TESTING_ON_CHILD_6W (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) TESTING_ON_SYMPTOMATIC (emodpy_hiv.campaign.cascade_of_care.CascadeState attribute) THREE_MONTHS (emodpy_hiv.utils.targeting_config.NumMonthsType attribute) time step timestep_from_year() (in module emodpy_hiv.campaign.cascade_of_care) to_age_distributions() (emodpy_hiv.demographics.year_age_rate.YearAgeRate method) to_csv() (emodpy_hiv.demographics.year_age_rate.YearAgeRate method) to_dict() (emodpy_hiv.demographics.assortivity.Assortivity method) (emodpy_hiv.demographics.concurrency_parameters.ConcurrencyParameters method) (emodpy_hiv.demographics.condom_usage_parameters.CondomUsageParameters method) (emodpy_hiv.demographics.hiv_node.HIVNode method) (emodpy_hiv.demographics.pair_formation_parameters.PairFormationParameters method) (emodpy_hiv.demographics.relationship_parameters.RelationshipParameters method) (emodpy_hiv.demographics.society.Society method) to_fertility_distributions() (emodpy_hiv.demographics.year_age_rate.YearAgeRate method) to_mortality_distributions() (emodpy_hiv.demographics.year_age_rate.YearAgeRate method) to_schema_dict() (emodpy_hiv.campaign.common.NChooserTargetedDistributionHIV method) (emodpy_hiv.campaign.common.ValueMap method) (emodpy_hiv.campaign.individual_intervention.IVCalendar.AgeAndProbability method) (emodpy_hiv.campaign.individual_intervention.RangeThreshold method) (emodpy_hiv.campaign.individual_intervention.Sigmoid method) (emodpy_hiv.campaign.waning_config.AbstractWaningConfig method) (emodpy_hiv.campaign.waning_config.BaseWaningConfig method) (emodpy_hiv.campaign.waning_config.Box method) (emodpy_hiv.campaign.waning_config.BoxExponential method) (emodpy_hiv.campaign.waning_config.Combo method) (emodpy_hiv.campaign.waning_config.Constant method) (emodpy_hiv.campaign.waning_config.Exponential method) (emodpy_hiv.campaign.waning_config.MapLinear method) (emodpy_hiv.campaign.waning_config.MapLinearAge method) (emodpy_hiv.campaign.waning_config.MapLinearSeasonal method) (emodpy_hiv.campaign.waning_config.MapPiecewise method) (emodpy_hiv.campaign.waning_config.RandomBox method) (emodpy_hiv.utils.targeting_config.AbstractTargetingConfig method) (emodpy_hiv.utils.targeting_config.HasBeenOnArtMoreOrLessThanNumMonths method) (emodpy_hiv.utils.targeting_config.HasCd4BetweenMinAndMax method) (emodpy_hiv.utils.targeting_config.HasHadMultiplePartnersInLastNumMonths method) (emodpy_hiv.utils.targeting_config.HasIntervention method) (emodpy_hiv.utils.targeting_config.HasIP method) (emodpy_hiv.utils.targeting_config.HasMoreOrLessThanNumPartners method) (emodpy_hiv.utils.targeting_config.HasRelationship method) (emodpy_hiv.utils.targeting_config.IsHivPositive method)

to_simple_dict() (emodpy_hiv.utils.targeting_config.AbstractTargetingConfig method) (emodpy_hiv.utils.targeting_config.HasRelationship method) transitory (emodpy_hiv.demographics.relationship_types.RelationshipTypes attribute) TRANSITORY (emodpy_hiv.reporters.reporters.RelationshipType attribute) (emodpy_hiv.utils.emod_enum.RelationshipType attribute) (emodpy_hiv.utils.targeting_config.OfRelationshipType attribute) transmissibility (\beta) TransmissionBlocking (emodpy_hiv.utils.emod_enum.VaccineType attribute) tutorial TWELVE_MONTHS (emodpy_hiv.utils.targeting_config.NumMonthsType attribute)

U

UNIFORM_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) UniformDistribution (class in emodpy_hiv.utils.distributions)

USE_DEFAULT (emodpy_hiv.utils.emod_enum.CondomUsageParametersType attribute) USER_SPECIFIED (emodpy_hiv.utils.emod_enum.SettingType attribute)

V

VaccineType (class in emodpy_hiv.utils.emod_enum) ValueMap (class in emodpy_hiv.campaign.common) VERSUS_TIME (emodpy_hiv.utils.emod_enum.SensitivityType attribute)

vertical transmission viral load virion virulence

W

WAIFW matrix Weibull distribution

WEIBULL_DISTRIBUTION (emodpy_hiv.utils.emod_enum.DistributionType attribute) WeibullDistribution (class in emodpy_hiv.utils.distributions) working directory

X

xy_plot() (in module emodpy_hiv.plotting.xy_plot)

Y

YearAgeRate (class in emodpy_hiv.demographics.year_age_rate) YES (emodpy_hiv.utils.targeting_config.YesNoNa attribute)

YesNoNa (class in emodpy_hiv.utils.targeting_config) YOUNGER_AGE (emodpy_hiv.utils.emod_enum.PrioritizePartnersBy attribute)

Z

Zambia (class in emodpy_hiv.countries.zambia.zambia)