emodpy_hiv package

Subpackages

• emodpy_hiv.campaign package
  • Submodules
    • emodpy_hiv.campaign.coc module
      • CustomEvent
      • CascadeState
      • timestep_from_year()
      • convert_time_value_map()
      • seed_infections()
      • add_csw()
      • add_post_debut_coinfection()
      • add_pmtct()
      • add_traditional_male_circumcision()
      • add_vmmc_reference_tracking()
      • add_historical_vmmc_nchooser()
      • add_health_care_testing()
      • add_ART_cascade()
      • add_state_TestingOnANC()
      • add_state_TestingOnChild6w()
      • add_state_HCTUptakeAtDebut()
      • add_state_HCTUptakePostDebut()
      • add_state_HCTTestingLoop()
      • add_state_TestingOnSymptomatic()
      • add_state_ARTStagingDiagnosticTest()
      • add_state_ARTStaging()
      • add_state_LinkingToPreART()
      • add_state_OnPreART()
      • add_state_LinkingToART()
      • add_state_OnART()
      • add_state_LostForever()
• emodpy_hiv.country_data package
  • Subpackages
    • emodpy_hiv.country_data.zambia package
• emodpy_hiv.demographics package
  • Submodules
    • emodpy_hiv.demographics.DemographicsTemplates module
      • get_society_dict()
      • get_default_society_dict()
    • emodpy_hiv.demographics.assortivity module
      • Assortivity
    • emodpy_hiv.demographics.concurrency_parameters module
      • ConcurrencyParameters
    • emodpy_hiv.demographics.condom_usage_parameters module
      • CondomUsageParameters
    • emodpy_hiv.demographics.country_models module
      • AgeBin
      • load_country_model_demographics_default()
    • emodpy_hiv.demographics.hiv_demographics module
      • HIVDemographics
    • emodpy_hiv.demographics.hiv_node module
      • HIVNode
    • emodpy_hiv.demographics.pair_formation_parameters module
      • PairFormationParameters
    • emodpy_hiv.demographics.relationship_parameters module
      • RelationshipParameters
    • emodpy_hiv.demographics.relationship_types module
      • RelationshipTypes
    • emodpy_hiv.demographics.society module
      • Society
• emodpy_hiv.interventions package
  • Submodules
    • emodpy_hiv.interventions.art module
      • new_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.artdropout module
      • new_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.artstagingbycd4agnosticdiag module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.artstagingbycd4diag module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.cascade_helpers module
      • reset()
      • seed_infection()
      • triggered_event_common()
      • add_triggered_event()
      • add_scheduled_event()
      • add_reference_tracked_event()
      • add_choice()
      • add_test()
      • trigger_art_from_pos_test()
      • add_art_from_trigger()
      • trigger_art()
    • emodpy_hiv.interventions.delay module
      • new_delay()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.drawblood module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.hivmuxer module
      • new_intervention()
      • add_hiv_muxer_event_with_trigger()
    • emodpy_hiv.interventions.malecirc module
      • new_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.modcoinf module
      • new_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.nchooser module
      • new_target_distribution()
      • add_nchooser_event()
      • add_nchooser_distributed_circumcision_event()
    • emodpy_hiv.interventions.outbreak module
      • new_intervention()
      • seed_infections()
    • emodpy_hiv.interventions.pmtct module
      • new_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.prep module
      • new_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.randomchoice module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.rapiddiag module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.reftracker module
      • DistributeIVByRefTrack()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.reftrackercoord module
      • DistributeIVByRefTrackCoord()
    • emodpy_hiv.interventions.setsexualdebut module
      • track_sexual_debut_intervention()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.sigmoiddiag module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.stipostdebut module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
    • emodpy_hiv.interventions.utils module
      • set_tvmap_lists_from_map()
      • declutter()
      • broadcast_event_immediate()
      • broadcast_event_delayed()
      • set_intervention_properties()
    • emodpy_hiv.interventions.yearandsexdiag module
      • new_diagnostic()
      • new_intervention_event()
      • new_intervention_as_file()
• emodpy_hiv.reporters package
  • Submodules
    • emodpy_hiv.reporters.builtin module
      • add_report_hiv_by_age_and_gender()
      • add_report_relationship_start()
      • add_report_relationship_consummated()
      • add_report_relationship_end()
      • add_transmission_report()
      • add_report_simulation_stats()
      • add_report_event_counter()
      • add_report_node_demographics()
      • add_event_recorder()
      • add_report_hiv_art()
      • add_report_hiv_infection()
      • add_report_hiv_mortality()
      • add_report_relationship_migration_tracking()
      • add_human_migration_tracking()
      • ReportHumanMigrationTracking
      • ReportRelationshipMigrationTracking
      • ReportEventCounter
      • ReportSimulationStats
      • ReportNodeDemographics

Submodules

• emodpy_hiv.country_model module
  • DefaultZambiaData
    • DefaultZambiaData.data_root
    • DefaultZambiaData.historical_vmmc_data_file
    • DefaultZambiaData.initial_age_distribution_file
    • DefaultZambiaData.initial_population_file
    • DefaultZambiaData.female_mortality_file
    • DefaultZambiaData.male_mortality_file
    • DefaultZambiaData.fertility_file
  • Country
    • Country.initialize_campaign()
    • Country.load_nchooser_distribution_data()
    • Country.add_male_circumcision()
    • Country.add_historical_vmmc_nchooser()
    • Country.add_traditional_male_circumcision()
    • Country.add_vmmc_reference_tracking()
    • Country.seed_infections()
    • Country.add_csw()
    • Country.add_post_debut_coinfection()
    • Country.add_pmtct()
    • Country.add_health_care_testing()
    • Country.add_ART_cascade()
    • Country.add_state_TestingOnANC()
    • Country.add_state_TestingOnChild6w()
    • Country.add_state_HCTUptakeAtDebut()
    • Country.add_state_HCTUptakePostDebut()
    • Country.add_state_HCTTestingLoop()
    • Country.add_state_TestingOnSymptomatic()
    • Country.add_state_ARTStagingDiagnosticTest()
    • Country.add_state_ARTStaging()
    • Country.add_state_LinkingToPreART()
    • Country.add_state_OnPreART()
    • Country.add_state_LinkingToART()
    • Country.add_state_OnART()
    • Country.add_state_LostForever()
    • Country.build_campaign()
  • Zambia
    • Zambia.build_config()
    • Zambia.build_campaign()
    • Zambia.build_demographics()
• emodpy_hiv.download module
  • download()
• emodpy_hiv.emod_task module
  • EMODHIVTask
    • EMODHIVTask.from_default()
    • EMODHIVTask.demographics
    • EMODHIVTask.migrations
    • EMODHIVTask.reporters
    • EMODHIVTask.climate
    • EMODHIVTask.config
    • EMODHIVTask.campaign
    • EMODHIVTask.simulation_demographics
    • EMODHIVTask.simulation_migrations
    • EMODHIVTask.py_path_list
    • EMODHIVTask.implicit_configs
• emodpy_hiv.utils module
  • non_schema_checks()