emodpy_hiv package#
Subpackages#
- emodpy_hiv.campaign package
- Submodules
- emodpy_hiv.campaign.cascade_of_care module
CustomEvent
CascadeState
timestep_from_year()
convert_time_value_map()
seed_infections()
add_csw()
add_post_debut_coinfection()
add_pmtct()
add_traditional_male_circumcision()
add_vmmc_reference_tracking()
add_historical_vmmc_nchooser()
add_health_care_testing()
add_ART_cascade()
add_state_TestingOnANC()
add_state_TestingOnChild6w()
add_state_HCTUptakeAtDebut()
add_state_HCTUptakePostDebut()
add_state_HCTTestingLoop()
add_state_TestingOnSymptomatic()
add_state_ARTStagingDiagnosticTest()
add_state_ARTStaging()
add_state_LinkingToPreART()
add_state_OnPreART()
add_state_LinkingToART()
add_state_OnART()
add_state_LostForever()
- emodpy_hiv.campaign.common module
- emodpy_hiv.campaign.distributor module
- emodpy_hiv.campaign.event_coordinator module
- emodpy_hiv.campaign.individual_intervention module
ARTDropout
AgeDiagnostic
AntiretroviralTherapy
AntiretroviralTherapyFull
CD4Diagnostic
CoitalActRiskFactors
FemaleContraceptive
HIVARTStagingByCD4Diagnostic
HIVARTStagingCD4AgnosticDiagnostic
HIVDrawBlood
HIVMuxer
HIVPiecewiseByYearAndSexDiagnostic
HIVRandomChoice
HIVRapidHIVDiagnostic
HIVSigmoidByYearAndSexDiagnostic
IVCalendar
InterventionForCurrentPartners
MaleCircumcision
ModifyStiCoInfectionStatus
PMTCT
RangeThreshold
STIBarrier
STIIsPostDebut
SetSexualDebutAge
Sigmoid
StartNewRelationship
BroadcastEvent
BroadcastEventToOtherNodes
ControlledVaccine
DelayedIntervention
IndividualImmunityChanger
IndividualNonDiseaseDeathRateModifier
MigrateIndividuals
MultiEffectBoosterVaccine
MultiEffectVaccine
MultiInterventionDistributor
OutbreakIndividual
PropertyValueChanger
SimpleBoosterVaccine
SimpleVaccine
StandardDiagnostic
- emodpy_hiv.campaign.node_intervention module
- emodpy_hiv.campaign.waning_config module
- emodpy_hiv.campaign.cascade_of_care module
- Submodules
- emodpy_hiv.countries package
- emodpy_hiv.demographics package
- Submodules
- emodpy_hiv.demographics.DemographicsTemplates module
- emodpy_hiv.demographics.assortivity module
- emodpy_hiv.demographics.concurrency_parameters module
- emodpy_hiv.demographics.condom_usage_parameters module
- emodpy_hiv.demographics.hiv_demographics module
- emodpy_hiv.demographics.hiv_node module
- emodpy_hiv.demographics.infer_natural_mortality module
- emodpy_hiv.demographics.library module
- emodpy_hiv.demographics.pair_formation_parameters module
- emodpy_hiv.demographics.relationship_parameters module
- emodpy_hiv.demographics.relationship_types module
- emodpy_hiv.demographics.risk_groups module
- emodpy_hiv.demographics.society module
- emodpy_hiv.demographics.un_world_pop module
- emodpy_hiv.demographics.year_age_rate module
- Submodules
- emodpy_hiv.plotting package
- Submodules
- emodpy_hiv.plotting.channel_report module
- emodpy_hiv.plotting.helpers module
- emodpy_hiv.plotting.plot_a_vs_b module
- emodpy_hiv.plotting.plot_hiv_by_age_and_gender module
create_title()
create_y_axis_name()
extract_population_data()
extract_population_data_multiple_ages()
extract_population_data_by_stratification()
extract_population_data_by_stratification_for_dir()
create_df_for_plot_by_stratification()
plot_population_for_dir()
plot_population_by_gender()
plot_population_by_ip()
plot_columns()
plot_circumcision_by_age()
extract_population_data_multiple_ages_for_dir()
create_df_for_plot_by_age()
base_plot_by_age()
plot_onART_by_age()
plot_population_by_age()
plot_vmmc_by_age()
plot_population_by_age_vs_unworld_pop()
plot_risk()
plot_vmmc_for_dir()
plot_prevalence_for_dir()
plot_risk_zambia()
- emodpy_hiv.plotting.plot_inset_chart module
- emodpy_hiv.plotting.plot_inset_chart_mean_compare module
- emodpy_hiv.plotting.plot_relationship_end module
- emodpy_hiv.plotting.plot_relationship_start module
- emodpy_hiv.plotting.xy_plot module
- Submodules
- emodpy_hiv.reporters package
- Submodules
- emodpy_hiv.reporters.reporters module
ReportNodeDemographics
ReportSimulationStats
ReportHumanMigrationTracking
ReportEventCounter
ReportEventRecorder
ReportPluginAgeAtInfection
ReportPluginAgeAtInfectionHistogram
SqlReport
ReportNodeEventRecorder
ReportCoordinatorEventRecorder
ReportSurveillanceEventRecorder
InsetChart
SpatialReport
ReportHIVByAgeAndGender
ReportRelationshipStart
ReportCoitalActs
ReportRelationshipEnd
ReportTransmission
ReportHIVART
ReportHIVInfection
ReportHIVMortality
ReportRelationshipMigrationTracking
ReportPfaQueues
ReportRelationshipCensus
ReportFilter
DemographicsReport
PropertyReport
ReportInfectionDuration
SpatialReportChannels
RelationshipType
- emodpy_hiv.reporters.reporters module
- Submodules
- emodpy_hiv.utils package
- Submodules
- emodpy_hiv.utils.config_utils module
- emodpy_hiv.utils.distributions module
- emodpy_hiv.utils.emod_enum module
- emodpy_hiv.utils.targeting_config module
AbstractTargetingConfig
BaseTargetingConfig
HasIP
HasIntervention
IsPregnant
YesNoNa
MoreOrLess
OfRelationshipType
NumMonthsType
RecentlyType
RelationshipTerminationReasonType
IsCircumcised
IsHivPositive
IsOnART
IsPostDebut
HasBeenOnArtMoreOrLessThanNumMonths
HasMoreOrLessThanNumPartners
HasHadMultiplePartnersInLastNumMonths
HasCd4BetweenMinAndMax
HasRelationship
- Submodules
Submodules#
- emodpy_hiv.country_model module
get_country_class()
Country
Country.country_name
Country.base_year
Country.generate_label()
Country.get_config_parameterized_calls()
Country.get_demographics_parameterized_calls()
Country.get_campaign_parameterized_calls()
Country.initialize_config()
Country.initialize_demographics()
Country.initialize_campaign()
Country.build_reports()
Country.build_config()
Country.build_demographics()
Country.build_campaign()
Country.load_nchooser_distribution_data()
Country.add_historical_vmmc_nchooser()
Country.add_traditional_male_circumcision()
Country.add_vmmc_reference_tracking()
Country.seed_infections()
Country.add_csw()
Country.add_post_debut_coinfection()
Country.add_pmtct()
Country.add_health_care_testing()
Country.add_ART_cascade()
Country.add_state_TestingOnANC()
Country.add_state_TestingOnChild6w()
Country.add_state_HCTUptakeAtDebut()
Country.add_state_HCTUptakePostDebut()
Country.add_state_HCTTestingLoop()
Country.add_state_TestingOnSymptomatic()
Country.add_state_ARTStagingDiagnosticTest()
Country.add_state_ARTStaging()
Country.add_state_LinkingToPreART()
Country.add_state_OnPreART()
Country.add_state_LinkingToART()
Country.add_state_OnART()
Country.add_state_LostForever()
- emodpy_hiv.download module
- emodpy_hiv.parameterized_call module