stisim package

Subpackages

• stisim.connectors package
  • Submodules
    • stisim.connectors.gud_syph module
      • gud_syph
    • stisim.connectors.hiv_sti module
      • hiv_syph
      • hiv_tv
      • hiv_ng
      • hiv_ct
      • hiv_bv
• stisim.diseases package
  • Submodules
    • stisim.diseases.bv module
      • BV
    • stisim.diseases.chlamydia module
      • Chlamydia
      • ChlamydiaBL
    • stisim.diseases.gonorrhea module
      • Gonorrhea
    • stisim.diseases.gud module
      • Placeholder
      • GUDPlaceholder
      • VDPlaceholder
      • GUD
    • stisim.diseases.hiv module
      • HIV
    • stisim.diseases.sti module
      • BaseSTI
      • SEIS
    • stisim.diseases.syphilis module
      • Syphilis
      • SyphilisPlaceholder
    • stisim.diseases.trichomoniasis module
      • Trichomoniasis
• stisim.interventions package
  • Submodules
    • stisim.interventions.base_interventions module
      • STIDx
      • STITest
      • SymptomaticTesting
      • STITreatment
      • PartnerNotification
      • ProductMix
    • stisim.interventions.gonorrhea_interventions module
      • GonorrheaTreatment
      • UpdateDrugs
    • stisim.interventions.hiv_interventions module
      • HIVDx
      • HIVTest
      • ART
      • VMMC
      • Prep
    • stisim.interventions.syphilis_interventions module
      • SyphDx
      • SyphTx
      • NewbornTreatment
      • SyphTest
      • ANCSyphTest
      • NewbornSyphTest

Submodules

• stisim.calibration module
  • Calibration
    • Calibration.run_sim()
    • Calibration.translate_pars()
    • Calibration.trial_to_sim_pars()
    • Calibration.run_trial()
    • Calibration.compute_fit()
    • Calibration.worker()
    • Calibration.run_workers()
    • Calibration.remove_db()
    • Calibration.make_study()
    • Calibration.calibrate()
    • Calibration.confirm_fit()
    • Calibration.parse_study()
    • Calibration.shrink()
    • Calibration.to_json()
    • Calibration.plot_sims()
    • Calibration.plot_trend()
  • compute_gof()
• stisim.networks module
  • StructuredSexual
    • StructuredSexual.process_condom_data()
    • StructuredSexual.get_age_risk_pars()
    • StructuredSexual.init_pre()
    • StructuredSexual.init_results()
    • StructuredSexual.init_post()
    • StructuredSexual.set_network_states()
    • StructuredSexual.over_debut()
    • StructuredSexual.set_risk_groups()
    • StructuredSexual.set_concurrency()
    • StructuredSexual.set_sex_work()
    • StructuredSexual.set_debut()
    • StructuredSexual.match_pairs()
    • StructuredSexual.add_pairs()
    • StructuredSexual.match_sex_workers()
    • StructuredSexual.end_pairs()
    • StructuredSexual.update_results()
    • StructuredSexual.net_beta()
    • StructuredSexual.set_condom_use()
    • StructuredSexual.count_partners()
    • StructuredSexual.step()
  • FastStructuredSexual
    • FastStructuredSexual.match_pairs()
  • AgeMatchedMSM
    • AgeMatchedMSM.match_pairs()
  • AgeApproxMSM
    • AgeApproxMSM.match_pairs()
• stisim.utils module
  • TimeSeries
    • TimeSeries.t
    • TimeSeries.vals
    • TimeSeries.units
    • TimeSeries.assumption
    • TimeSeries.sigma
    • TimeSeries.copy()
    • TimeSeries.has_data
    • TimeSeries.has_time_data
    • TimeSeries.insert()
    • TimeSeries.get()
    • TimeSeries.get_arrays()
    • TimeSeries.remove()
    • TimeSeries.remove_before()
    • TimeSeries.remove_after()
    • TimeSeries.remove_between()
    • TimeSeries.interpolate()
    • TimeSeries.sample()
  • make_init_prev_fn()
  • finalize_results()
  • shrink_calib()
• stisim.version module