Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W _ __add__() (BasePeople method) __call__() (Options method) A add_contacts() (BasePeople method) add_layer() (Contacts method) age_histogram (class in covasim.analysis) AlreadyRunError Analyzer (class in covasim.analysis) animate() (TransTree method) append() (Layer method) apply() (Analyzer method) (BaseVaccination method) (contact_tracing method) (dynamic_pars method) (Intervention method) (sequence method) (simple_vaccine method) (test_prob method) (variant method) B BasePeople (class in covasim.base) BaseSim (class in covasim.base) BaseVaccination (class in covasim.interventions) binomial_arr (class in covasim.utils) binomial_filter (class in covasim.utils) brief() (MultiSim method) (Scenarios method) (Sim method) C calibrate() (Calibration method) (Sim method) Calibration (class in covasim.analysis) change_beta (class in covasim.interventions) changed() (Options method) check_critical() (People method) check_death() (People method) check_diagnosed() (People method) check_exit_iso() (People method) check_inds() (People method) check_infectious() (People method) check_quar() (People method) check_recovery() (People method) check_save_version (class in covasim.misc) check_sciris (class in covasim.requirements) check_severe() (People method) check_symptomatic() (People method) check_synthpops (class in covasim.requirements) check_version (class in covasim.misc) choose_w (class in covasim.utils) clip_edges (class in covasim.interventions) combine() (MultiSim method) compare() (MultiSim method) (Scenarios method) compute() (Fit method) compute_diffs() (Fit method) compute_doubling() (Sim method) compute_fit() (Sim method) compute_gen_time() (Sim method) compute_gof (class in covasim.misc) compute_gofs() (Fit method) compute_losses() (Fit method) compute_mismatch() (Fit method) compute_r_eff() (Sim method) compute_results() (Sim method) compute_states() (Sim method) compute_summary() (Sim method) compute_windows() (age_histogram method) compute_yield() (Sim method) contact_tracing (class in covasim.interventions) Contacts (class in covasim.base) context() (Options method) copy() (BaseSim method) count() (BasePeople method) count_by_variant() (BasePeople method) count_not() (BasePeople method) count_targets() (TransTree method) count_transmissions() (TransTree method) covasim.analysis module covasim.base module covasim.data module covasim.data.country_age_data module covasim.data.household_size_data module covasim.data.loaders module covasim.data.state_age_data module covasim.defaults module covasim.immunity module covasim.interventions module covasim.misc module covasim.parameters module covasim.people module covasim.plotting module covasim.population module covasim.requirements module covasim.run module covasim.settings module covasim.sim module covasim.utils module D daily_age_stats (class in covasim.analysis) daily_stats (class in covasim.analysis) date (class in covasim.misc) date() (BaseSim method) date_keys() (BasePeople method) date_range (in module covasim.misc) datevec (BaseSim property) day (class in covasim.misc) day() (BaseSim method) (TransTree method) daydiff (class in covasim.misc) default_float (in module covasim.defaults) default_int (in module covasim.defaults) defined (class in covasim.utils) defined() (BasePeople method) demo (class in covasim.sim) diff_sims (class in covasim.sim) disp() (Intervention method) (MultiSim method) (Options method) (Scenarios method) (Sim method) dur_keys() (BasePeople method) dynamic_pars (class in covasim.interventions) E estimate_prob() (historical_vaccinate_prob static method) export_pars() (BaseSim method) export_results() (BaseSim method) F false (class in covasim.utils) false() (BasePeople method) finalize() (Analyzer method) (BaseVaccination method) (clip_edges method) (Intervention method) (Sim method) (test_num method) (test_prob method) find_contacts() (Layer method) Fit (class in covasim.analysis) FlexDict (class in covasim.base) from_df() (Layer method) from_list() (BasePeople method) from_sim() (age_histogram method) G get() (age_histogram method) (BasePeople method) (snapshot method) get_age_distribution (class in covasim.data.loaders) get_analyzer() (BaseSim method) get_analyzers() (BaseSim method) get_country_aliases (class in covasim.data.loaders) get_cross_immunity (class in covasim.parameters) get_default() (Options method) get_default_colors (class in covasim.defaults) get_default_plots (class in covasim.defaults) get_doubling_time (class in covasim.misc) get_household_size (class in covasim.data.loaders) get_intervention() (BaseSim method) get_interventions() (BaseSim method) get_orig_options() (Options static method) get_pdf (class in covasim.utils) get_png_metadata (class in covasim.misc) get_prognoses (class in covasim.parameters) get_vaccine_choices (class in covasim.parameters) get_vaccine_dose_pars (class in covasim.parameters) get_vaccine_variant_pars (class in covasim.parameters) get_variant_choices (class in covasim.parameters) get_variant_pars (class in covasim.parameters) get_version_pars (class in covasim.misc) git_info (class in covasim.misc) H help (class in covasim.misc) help() (Options method) historical_vaccinate_prob (class in covasim.interventions) historical_wave (class in covasim.interventions) I idefined (class in covasim.utils) idefinedi (class in covasim.utils) identify_contacts() (contact_tracing method) ifalse (class in covasim.utils) ifalsei (class in covasim.utils) indices() (BasePeople method) infect() (People method) init_analyzers() (Sim method) init_contacts() (BasePeople method) init_flows() (People method) init_immunity() (Sim method) init_infections() (Sim method) init_interventions() (Sim method) init_people() (Sim method) init_results() (Sim method) init_sims() (MultiSim method) init_variants() (Sim method) initialize() (Analyzer method) (change_beta method) (contact_tracing method) (Intervention method) (People method) (sequence method) (Sim method) (simple_vaccine method) (test_num method) (test_prob method) (variant method) intersect() (daily_stats method) Intervention (class in covasim.interventions) InterventionDict (class in covasim.interventions) itrue (class in covasim.utils) itruei (class in covasim.utils) iundefined (class in covasim.utils) iundefinedi (class in covasim.utils) K keys() (BasePeople method) L Layer (class in covasim.base) layer_keys() (BasePeople method) (Sim method) load (class in covasim.misc) load() (BasePeople static method) (BaseSim static method) (MultiSim static method) (Options method) (Scenarios static method) load_data (class in covasim.misc) load_data() (Sim method) load_population() (Sim method) lock() (BasePeople method) M make_age_histogram() (Sim method) make_detailed() (TransTree method) make_edgelist() (BasePeople method) make_hybrid_contacts (class in covasim.population) make_metapars (class in covasim.run) make_microstructured_contacts (class in covasim.population) make_naive() (People method) make_nonnaive() (People method) make_pars (class in covasim.parameters) make_people (class in covasim.population) make_random_contacts (class in covasim.population) make_randpop (class in covasim.population) make_report() (daily_stats method) make_study() (Calibration method) make_synthpop (class in covasim.population) make_transtree() (Sim method) map_entries (class in covasim.data.loaders) mean() (MultiSim method) median() (MultiSim method) members (Layer property) merge() (MultiSim static method) meta_keys() (Layer method) migrate (class in covasim.misc) module covasim.analysis covasim.base covasim.data covasim.data.country_age_data covasim.data.household_size_data covasim.data.loaders covasim.data.state_age_data covasim.defaults covasim.immunity covasim.interventions covasim.misc covasim.parameters covasim.people covasim.plotting covasim.population covasim.requirements covasim.run covasim.settings covasim.sim covasim.utils multi_run (class in covasim.run) MultiSim (class in covasim.run) N n (BaseSim property) n_binomial (class in covasim.utils) n_multinomial (class in covasim.utils) n_neg_binomial (class in covasim.utils) nab_histogram (class in covasim.analysis) notify_contacts() (contact_tracing method) npts (BaseSim property) O Options (class in covasim.settings) P parallel (class in covasim.run) parse() (variant method) parse_study() (Calibration method) ParsObj (class in covasim.base) People (class in covasim.people) Person (class in covasim.base) person() (BasePeople method) person_keys() (BasePeople method) plot() (age_histogram method) (daily_age_stats method) (daily_stats method) (Fit method) (MultiSim method) (nab_histogram method) (People method) (Scenarios method) (Sim method) (TransTree method) plot_all() (Calibration method) plot_best() (Calibration method) plot_compare (class in covasim.plotting) plot_compare() (MultiSim method) plot_histograms() (TransTree method) plot_intervention() (Intervention method) plot_people (class in covasim.plotting) plot_result (class in covasim.plotting) plot_result() (MultiSim method) (Sim method) plot_scens (class in covasim.plotting) plot_sim (class in covasim.plotting) plot_sims() (Calibration method) plot_stride() (Calibration method) plot_trend() (Calibration method) plotly_animate (class in covasim.plotting) plotly_people (class in covasim.plotting) plotly_sim (class in covasim.plotting) pop_inds() (Layer method) pop_layer() (Contacts method) prior_immunity (class in covasim.interventions) process_days() (historical_vaccinate_prob static method) R r0() (TransTree method) reconcile_inputs() (Fit method) reduce() (MultiSim method) remove_db() (Calibration method) remove_duplicates() (BasePeople static method) report() (daily_stats method) rescale() (Sim method) reset() (MultiSim method) reset_layer_pars (class in covasim.parameters) reset_layer_pars() (Sim method) Result (class in covasim.base) result_keys() (BaseSim method) (MultiSim method) (Scenarios method) run() (MultiSim method) (Scenarios method) (Sim method) run_sim() (Calibration method) run_trial() (Calibration method) run_workers() (Calibration method) S sample (class in covasim.utils) save (class in covasim.misc) save() (BasePeople method) (BaseSim method) (MultiSim method) (Options method) (Scenarios method) savefig (class in covasim.misc) scaled_pop_size (BaseSim property) Scenarios (class in covasim.run) schedule_quarantine() (People method) select_cases() (contact_tracing method) select_people() (BaseVaccination method) sequence (class in covasim.interventions) set() (BasePeople method) (Options method) set_matplotlib_global() (Options method) set_metadata() (BaseSim method) set_pars() (BasePeople method) set_prognoses() (People method) set_seed (class in covasim.utils) set_seed() (BaseSim method) show_locations (class in covasim.data.loaders) shrink() (Analyzer method) (BaseSim method) (BaseVaccination method) (Intervention method) (MultiSim method) Sim (class in covasim.sim) simple_vaccine (class in covasim.interventions) single_run (class in covasim.run) snapshot (class in covasim.analysis) split() (MultiSim method) state_keys() (BasePeople method) step() (Sim method) story() (People method) summarize() (BasePeople method) (Calibration method) (Fit method) (MultiSim method) (Scenarios method) (Sim method) T test() (People method) test_num (class in covasim.interventions) test_prob (class in covasim.interventions) to_arr() (BasePeople method) to_df() (BasePeople method) (BaseSim method) (daily_age_stats method) (Layer method) to_dict() (Options method) to_excel() (BaseSim method) (MultiSim method) (Scenarios method) to_graph() (BasePeople method) (Contacts method) (Layer method) to_json() (Analyzer method) (BaseSim method) (Calibration method) (Intervention method) (MultiSim method) (Scenarios method) to_list() (BasePeople method) to_total_df() (daily_age_stats method) transpose() (daily_stats method) TransTree (class in covasim.analysis) true (class in covasim.utils) true() (BasePeople method) tvec (BaseSim property) U undefined (class in covasim.utils) undefined() (BasePeople method) unlock() (BasePeople method) update() (Layer method) update_contacts() (People method) update_pars() (BaseSim method) (ParsObj method) update_states_post() (People method) update_states_pre() (People method) use_style() (Options method) V vaccinate (class in covasim.interventions) vaccinate() (BaseVaccination method) vaccinate_num (class in covasim.interventions) vaccinate_prob (class in covasim.interventions) validate() (BasePeople method) (Layer method) validate_layer_pars() (Sim method) validate_pars() (Sim method) variant (class in covasim.immunity) W with_style() (Options method) worker() (Calibration method)
