emodpy package

Subpackages

• emodpy.analyzers package
  • Submodules
    • emodpy.analyzers.adult_vectors_analyzer module
      • AdultVectorsAnalyzer
    • emodpy.analyzers.population_analyzer module
      • PopulationAnalyzer
    • emodpy.analyzers.timeseries_analyzer module
      • TimeseriesAnalyzer
• emodpy.defaults package
  • Subpackages
    • emodpy.defaults.ep4 package
      • Submodules
  • Submodules
    • emodpy.defaults.emod_sir module
      • EMODSir
    • emodpy.defaults.iemod_default module
      • IEMODDefault
• emodpy.generic package
  • Submodules
    • emodpy.generic.serialization module
      • enable_serialization()
      • add_serialization_timesteps()
      • load_serialized_population()
• emodpy.interventions package
  • Submodules
    • emodpy.interventions.emod_empty_campaign module
      • EMODEmptyCampaign
• emodpy.reporters package
  • Submodules
    • emodpy.reporters.base module
      • BaseReporter
      • CustomReporter
      • BuiltInReporter
      • Reporters
    • emodpy.reporters.builtin module
      • ReportNodeDemographics
      • ReportHumanMigrationTracking
    • emodpy.reporters.custom module
      • ReportAgeAtInfectionHistogramPlugin
      • ReportHumanMigrationTracking
      • ReportNodeDemographics
      • ReportEventCounter

Submodules

• emodpy.bamboo module
  • get_model_files()
• emodpy.bamboo_api_utils module
  • bamboo_connection()
  • BambooConnection
    • BambooConnection.server
    • BambooConnection.session_cookie
    • BambooConnection.get_server_url()
    • BambooConnection.find_server()
    • BambooConnection.url_exists()
    • BambooConnection.session_cookie_filename
    • BambooConnection.load_session_cookie()
    • BambooConnection.write_session_cookie()
    • BambooConnection.get_bamboo_url()
    • BambooConnection.get_bamboo_api_url()
    • BambooConnection.save_credentials()
    • BambooConnection.ensure_logged_in()
    • BambooConnection.login_session_exists()
    • BambooConnection.login()
    • BambooConnection.normalize_url()
    • BambooConnection.make_get_request()
    • BambooConnection.make_api_get_request()
    • BambooConnection.download_file()
  • BuildInfo
    • BuildInfo.build_passed()
    • BuildInfo.successful_build_result()
    • BuildInfo.get_build_info()
    • BuildInfo.get_latest_successful_build()
    • BuildInfo.get_latest_build()
  • BuildArtifacts
    • BuildArtifacts.ERADICATION_EXE
    • BuildArtifacts.SCHEMA_JSON
    • BuildArtifacts.REPORTER_PLUGINS
    • BuildArtifacts.find_artifacts_by_name()
    • BuildArtifacts.find_artifacts()
    • BuildArtifacts.find_build_essential_artifacts()
    • BuildArtifacts.find_all_artifacts()
    • BuildArtifacts.find_all_artifact_names()
    • BuildArtifacts.download_artifact_to_file()
    • BuildArtifacts.download_artifacts_to_path()
    • BuildArtifacts.download_latest_good_Eradication_exe()
    • BuildArtifacts.download_latest_good_schema_json()
    • BuildArtifacts.download_eradication_exe()
    • BuildArtifacts.make_exe_executable()
    • BuildArtifacts.download_schema_json()
    • BuildArtifacts.download_from_bamboo_url()
  • BuildPlans
    • BuildPlans.export_spec()
    • BuildPlans.get_plans_for_project()
  • login()
  • save_credentials()
• emodpy.collections_utils module
  • cut_iterable_to()
  • deep_get()
  • deep_set()
  • deep_del()
• emodpy.emod_campaign module
  • EMODCampaign
    • EMODCampaign.json
    • EMODCampaign.load_from_file()
    • EMODCampaign.load_from_dict()
    • EMODCampaign.clear()
    • EMODCampaign.get_events_at()
    • EMODCampaign.get_events_with_name()
    • EMODCampaign.add_event()
    • EMODCampaign.add_events()
• emodpy.emod_file module
  • InputFilesList
    • InputFilesList.set_task_config()
    • InputFilesList.gather_assets()
  • MigrationTypes
    • MigrationTypes.LOCAL
    • MigrationTypes.AIR
    • MigrationTypes.FAMILY
    • MigrationTypes.REGIONAL
    • MigrationTypes.SEA
  • MigrationModel
    • MigrationModel.NO_MIGRATION
    • MigrationModel.FIXED_RATE_MIGRATION
  • MigrationPattern
    • MigrationPattern.RANDOM_WALK_DIFFUSION
    • MigrationPattern.SINGLE_ROUND_TRIPS
    • MigrationPattern.WAYPOINTS_HOME
  • MigrationFiles
    • MigrationFiles.enable_migration()
    • MigrationFiles.update_migration_pattern()
    • MigrationFiles.add_migration_from_file()
    • MigrationFiles.set_task_config()
    • MigrationFiles.gather_assets()
    • MigrationFiles.set_all_persisted()
    • MigrationFiles.merge_with()
    • MigrationFiles.read_config_file()
  • DemographicsFiles
    • DemographicsFiles.set_task_config()
    • DemographicsFiles.add_demographics_from_file()
    • DemographicsFiles.add_demographics_from_dict()
  • ClimateFileType
    • ClimateFileType.AIR_TEMPERATURE
    • ClimateFileType.LAND_TEMPERATURE
    • ClimateFileType.RELATIVE_HUMIDITY
    • ClimateFileType.RAINFALL
  • ClimateModel
    • ClimateModel.CLIMATE_OFF
    • ClimateModel.CLIMATE_CONSTANT
    • ClimateModel.CLIMATE_KOPPEN
    • ClimateModel.CLIMATE_BY_DATA
  • ClimateFiles
    • ClimateFiles.set_task_config()
    • ClimateFiles.add_climate_files()
    • ClimateFiles.gather_assets()
    • ClimateFiles.set_climate_constant()
    • ClimateFiles.read_config_file()
• emodpy.emod_task module
  • dev_mode
  • add_ep4_from_path()
  • default_ep4_fn()
  • EMODTask
    • EMODTask.eradication_path
    • EMODTask.demographics
    • EMODTask.migrations
    • EMODTask.reporters
    • EMODTask.climate
    • EMODTask.config
    • EMODTask.config_file_name
    • EMODTask.campaign
    • EMODTask.simulation_demographics
    • EMODTask.simulation_migrations
    • EMODTask.use_embedded_python
    • EMODTask.py_path_list
    • EMODTask.is_linux
    • EMODTask.implicit_configs
    • EMODTask.sif_filename
    • EMODTask.sif_path
    • EMODTask.create_campaign_from_callback()
    • EMODTask.create_demog_from_callback()
    • EMODTask.handle_implicit_configs()
    • EMODTask.from_default2()
    • EMODTask.from_files()
    • EMODTask.load_files()
    • EMODTask.pre_creation()
    • EMODTask.set_command_line()
    • EMODTask.add_py_path()
    • EMODTask.set_sif()
    • EMODTask.gather_common_assets()
    • EMODTask.gather_transient_assets()
    • EMODTask.copy_simulation()
    • EMODTask.set_parameter()
    • EMODTask.set_parameter_sweep_callback()
    • EMODTask.set_parameter_partial()
    • EMODTask.get_parameter()
    • EMODTask.update_parameters()
    • EMODTask.reload_from_simulation()
    • EMODTask.get_file_from_comps()
    • EMODTask.cache_experiment_metadata_in_sql()
    • EMODTask.handle_experiment_completion()
  • EMODTaskSpecification
    • EMODTaskSpecification.get()
    • EMODTaskSpecification.get_description()
    • EMODTaskSpecification.get_example_urls()
    • EMODTaskSpecification.get_type()
    • EMODTaskSpecification.get_version()
• emodpy.utils module
  • EradicationPlatformExtension
    • EradicationPlatformExtension.LINUX
    • EradicationPlatformExtension.Windows
  • EradicationBambooBuilds
    • EradicationBambooBuilds.GENERIC_LINUX
    • EradicationBambooBuilds.GENERIC_WIN
    • EradicationBambooBuilds.GENERIC
    • EradicationBambooBuilds.TBHIV_LINUX
    • EradicationBambooBuilds.TBHIV_WIN
    • EradicationBambooBuilds.TBHIV
    • EradicationBambooBuilds.MALARIA_LINUX
    • EradicationBambooBuilds.MALARIA_WIN
    • EradicationBambooBuilds.MALARIA
    • EradicationBambooBuilds.HIV_LINUX
    • EradicationBambooBuilds.HIV_WIN
    • EradicationBambooBuilds.HIV
    • EradicationBambooBuilds.DENGUE_LINUX
    • EradicationBambooBuilds.DENGUE_WIN
    • EradicationBambooBuilds.DENGUE
    • EradicationBambooBuilds.FP_LINUX
    • EradicationBambooBuilds.FP_WIN
    • EradicationBambooBuilds.FP
    • EradicationBambooBuilds.TYPHOID_LINUX
    • EradicationBambooBuilds.TYPHOID_WIN
    • EradicationBambooBuilds.TYPHOID
    • EradicationBambooBuilds.EMOD_RELEASE
    • EradicationBambooBuilds.RELEASE
  • BambooArtifact
    • BambooArtifact.ERADICATION
    • BambooArtifact.SCHEMA
    • BambooArtifact.PLUGINS
    • BambooArtifact.ALL
  • get_github_eradication_url()
  • save_bamboo_credentials()
  • bamboo_api_login()
  • download_bamboo_artifacts()
  • download_latest_bamboo()
  • download_latest_eradication()
  • download_latest_reporters()
  • download_latest_schema()
  • download_from_url()
  • download_eradication()