emodpy package

Subpackages

• emodpy.analyzers package
  • Submodules
    • emodpy.analyzers.adult_vectors_analyzer module
      • AdultVectorsAnalyzer
    • emodpy.analyzers.population_analyzer module
      • PopulationAnalyzer
    • emodpy.analyzers.timeseries_analyzer module
      • TimeseriesAnalyzer
• emodpy.campaign package
  • Submodules
    • emodpy.campaign.base_intervention module
      • InterventionType
      • IndividualIntervention
      • NodeIntervention
    • emodpy.campaign.common module
      • CommonInterventionParameters
      • TargetGender
      • TargetDemographicsConfig
      • RepetitionConfig
      • PropertyRestrictions
      • ValueMap
    • emodpy.campaign.distributor module
      • add_intervention_scheduled()
      • add_intervention_triggered()
    • emodpy.campaign.emod_campaign module
      • EMODCampaign
    • emodpy.campaign.event module
      • BaseEvent
      • CampaignEventByYear
      • CampaignEvent
      • create_campaign_event()
    • emodpy.campaign.event_coordinator module
      • BaseEventCoordinator
      • InterventionDistributorEventCoordinator
      • StandardEventCoordinator
    • emodpy.campaign.individual_intervention module
      • BroadcastEvent
      • BroadcastEventToOtherNodes
      • ControlledVaccine
      • DelayedIntervention
      • IVCalendar
      • IndividualImmunityChanger
      • IndividualNonDiseaseDeathRateModifier
      • MigrateIndividuals
      • MultiEffectBoosterVaccine
      • MultiEffectVaccine
      • MultiInterventionDistributor
      • OutbreakIndividual
      • PropertyValueChanger
      • SimpleBoosterVaccine
      • SimpleVaccine
      • StandardDiagnostic
    • emodpy.campaign.node_intervention module
      • MultiNodeInterventionDistributor
      • BroadcastNodeEvent
      • ImportPressure
      • MigrateFamily
      • NodePropertyValueChanger
      • Outbreak
    • emodpy.campaign.utils module
      • set_event()
      • get_trigger_conditions()
    • emodpy.campaign.waning_config module
      • AbstractWaningConfig
      • BaseWaningConfig
      • Combo
      • Box
      • BoxExponential
      • Constant
      • Exponential
      • MapLinear
      • MapLinearAge
      • MapLinearSeasonal
      • MapPiecewise
      • RandomBox
• emodpy.generic package
  • Submodules
    • emodpy.generic.serialization module
      • enable_serialization()
      • add_serialization_timesteps()
      • load_serialized_population()
• emodpy.reporters package
  • Submodules
    • emodpy.reporters.base module
      • ReportFilter
      • AbstractBaseReporter
      • BuiltInReporter
      • ConfigReporter
      • Reporters
    • emodpy.reporters.common module
      • SpatialReportChannels
      • ReportHumanMigrationTracking
      • ReportNodeDemographics
      • ReportPluginAgeAtInfection
      • ReportPluginAgeAtInfectionHistogram
      • SqlReport
      • ReportEventCounter
      • ReportSimulationStats
      • ReportDrugStatus
      • ReportInfectionDuration
      • ReportEventRecorder
      • ReportNodeEventRecorder
      • ReportCoordinatorEventRecorder
      • ReportSurveillanceEventRecorder
      • InsetChart
      • SpatialReport
      • DemographicsReport
      • PropertyReport
• emodpy.utils package
  • is_valid_key_value_pair()
  • validate_key_value_pair()
  • validate_value_range()
  • validate_bins()
  • validate_node_ids()
  • validate_node_property()
  • validate_individual_property()
  • validate_intervention_name()
  • validate_individual_event()
  • validate_node_event()
  • validate_coordinator_event()
  • validate_surveillance_event()
  • validate_list_of_strings()
  • Submodules
    • emodpy.utils.collections_utils module
      • cut_iterable_to()
      • deep_get()
      • deep_set()
      • deep_del()
    • emodpy.utils.distributions module
      • BaseDistribution
      • ConstantDistribution
      • UniformDistribution
      • GaussianDistribution
      • ExponentialDistribution
      • PoissonDistribution
      • LogNormalDistribution
      • DualConstantDistribution
      • BimodalDistribution
      • WeibullDistribution
      • DualExponentialDistribution
    • emodpy.utils.emod_constants module
    • emodpy.utils.emod_enum module
      • StrEnum
      • DistributionType
      • NodeSelectionType
      • VaccineType
      • SensitivityType
      • EventOrConfig
      • SettingType
    • emodpy.utils.targeting_config module
      • AbstractTargetingConfig
      • BaseTargetingConfig
      • HasIP
      • HasIntervention
      • IsPregnant

Submodules

• emodpy.emod_file module
  • InputFilesList
    • InputFilesList.set_task_config()
    • InputFilesList.gather_assets()
  • MigrationTypes
    • MigrationTypes.LOCAL
    • MigrationTypes.AIR
    • MigrationTypes.FAMILY
    • MigrationTypes.REGIONAL
    • MigrationTypes.SEA
  • MigrationModel
    • MigrationModel.NO_MIGRATION
    • MigrationModel.FIXED_RATE_MIGRATION
  • MigrationPattern
    • MigrationPattern.RANDOM_WALK_DIFFUSION
    • MigrationPattern.SINGLE_ROUND_TRIPS
    • MigrationPattern.WAYPOINTS_HOME
  • MigrationFiles
    • MigrationFiles.enable_migration()
    • MigrationFiles.update_migration_pattern()
    • MigrationFiles.add_migration_from_file()
    • MigrationFiles.set_task_config()
    • MigrationFiles.gather_assets()
    • MigrationFiles.set_all_persisted()
    • MigrationFiles.merge_with()
    • MigrationFiles.read_config_file()
  • DemographicsFiles
    • DemographicsFiles.set_task_config()
    • DemographicsFiles.add_demographics_from_files()
    • DemographicsFiles.add_demographics_from_dict()
  • ClimateFileType
    • ClimateFileType.AIR_TEMPERATURE
    • ClimateFileType.LAND_TEMPERATURE
    • ClimateFileType.RELATIVE_HUMIDITY
    • ClimateFileType.RAINFALL
  • ClimateModel
    • ClimateModel.CLIMATE_OFF
    • ClimateModel.CLIMATE_CONSTANT
    • ClimateModel.CLIMATE_KOPPEN
    • ClimateModel.CLIMATE_BY_DATA
  • ClimateFiles
    • ClimateFiles.set_task_config()
    • ClimateFiles.add_climate_files()
    • ClimateFiles.gather_assets()
    • ClimateFiles.set_climate_constant()
    • ClimateFiles.read_config_file()
• emodpy.emod_task module
  • EMODTask
    • EMODTask.eradication_path
    • EMODTask.demographics
    • EMODTask.migrations
    • EMODTask.reporters
    • EMODTask.climate
    • EMODTask.config
    • EMODTask.config_file_name
    • EMODTask.campaign
    • EMODTask.simulation_demographics
    • EMODTask.simulation_migrations
    • EMODTask.schema_path
    • EMODTask.use_embedded_python
    • EMODTask.py_path_list
    • EMODTask.is_linux
    • EMODTask.implicit_configs
    • EMODTask.sif_filename
    • EMODTask.sif_path
    • EMODTask.create_campaign_from_callback()
    • EMODTask.create_demographics_from_callback()
    • EMODTask.handle_implicit_configs()
    • EMODTask.build_default_config()
    • EMODTask.build_default_campaign()
    • EMODTask.from_defaults()
    • EMODTask.from_files()
    • EMODTask.pre_creation()
    • EMODTask.set_command_line()
    • EMODTask.add_py_path()
    • EMODTask.set_sif()
    • EMODTask.gather_common_assets()
    • EMODTask.gather_transient_assets()
    • EMODTask.copy_simulation()
    • EMODTask.set_parameter()
    • EMODTask.set_parameter_sweep_callback()
    • EMODTask.set_parameter_partial()
    • EMODTask.get_parameter()
    • EMODTask.add_embedded_python_scripts_from_path()
    • EMODTask.add_serialized_population_files_from_path()
    • EMODTask.reload_from_simulation()
  • EMODTaskSpecification
    • EMODTaskSpecification.get()
    • EMODTaskSpecification.get_description()
    • EMODTaskSpecification.get_type()
    • EMODTaskSpecification.get_version()