Gibson-Bruck next reaction¶

The Gibson-Bruck next reaction method [1] is an exact stochastic simulation algorithm that is more efficient than the standard Gillespie (SSA). Specifically, this method uses only a single random number per simulation event. Also, the simulation time is proportional to the logarithm of the number of reactions. The implementation of the next reaction method in this framework is based on the work by Gibson et. al. [1]

Parameter	Data type	Description
solver	string	Next, NextReaction, and GibsonBruck are all valid names to run this solver.

Example¶

{
    "duration" : 365,
    "runs"   : 512,
    "solver" : "NextReaction"
} 