Index

A

accumulate_channel_data() (in module emod_api.channelreports.utils) add() (emod_api.demographics.PropertiesAndAttributes.IndividualProperties method) (in module emod_api.campaign) add_migration_event() (in module emod_api.interventions.migration) add_parameter() (emod_api.demographics.PropertiesAndAttributes.IndividualProperties method) (emod_api.demographics.Updateable.Updateable method) AddAgeDependentTransmission() (emod_api.demographics.Demographics.DemographicsBase method) AddIndividualPropertyAndHINT() (emod_api.demographics.Demographics.DemographicsBase method) AddMortalityByAgeSexAndYear() (emod_api.demographics.Demographics.DemographicsBase method) AgeStructureUNWPP() (in module emod_api.demographics.DemographicsTemplates) AgesYears (emod_api.migration.migration.Migration property) AIR (emod_api.migration.migration.Migration attribute) append() (emod_api.serialization.dtkFileTools.DtkFile.Contents method) (emod_api.serialization.dtkFileTools.DtkFile.Objects method) application() (in module emod_api.config.dtk_post_process_adhocevents) (in module emod_api.config.dtk_pre_process_adhocevents) (in module emod_api.config.dtk_pre_process_w5ml) (in module emod_api.schema.dtk_post_process_schema)

apply_overlay() (emod_api.demographics.Demographics.DemographicsBase method) apply_to_defaults_or_nodes() (in module emod_api.demographics.demographics_utils) arcsec_to_deg() (in module emod_api.demographics.DemographicsGenerator) as_dataframe() (emod_api.channelreports.channels.ChannelReport method) as_dictionary() (emod_api.channelreports.channels.Channel method) (emod_api.channelreports.channels.Header method) asset collection assets Author (emod_api.migration.migration.Migration property) author (emod_api.serialization.dtkFileTools.DtkFile property) (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property)

B

BaseInputFile (class in emod_api.demographics.BaseInputFile) basicNode() (in module emod_api.demographics.Node) birth_rate (emod_api.demographics.Node.Node property) birthrate_multiplier() (in module emod_api.demographics.DemographicsTemplates)

BroadcastEvent() (in module emod_api.interventions.common) BroadcastEventToOtherNodes() (in module emod_api.interventions.common) builder byte_count (emod_api.serialization.dtkFileTools.DtkFile property)

C

call_plot_traces() (in module emod_api.channelreports.plot_prop_report) change_individual_property() (in module emod_api.interventions.common) change_individual_property_at_age() (in module emod_api.interventions.common) change_individual_property_scheduled() (in module emod_api.interventions.common) change_individual_property_triggered() (in module emod_api.interventions.common) change_ser_pop() (in module emod_api.serialization.CensusAndModPop) Channel (class in emod_api.channelreports.channels) channel_names (emod_api.channelreports.channels.ChannelReport property) ChannelReport (class in emod_api.channelreports.channels) channels (emod_api.channelreports.channels.ChannelReport property) chunk_count (emod_api.serialization.dtkFileTools.DtkFile property) chunk_sizes (emod_api.serialization.dtkFileTools.DtkFile property) chunks (emod_api.serialization.dtkFileTools.DtkFile property) collect() (in module emod_api.channelreports.plot_icj_means) (in module emod_api.spatialreports.plot_spat_means)

compress() (emod_api.serialization.dtkFileSupport.EllZeeFour class method) (emod_api.serialization.dtkFileSupport.Snappy class method) (emod_api.serialization.dtkFileSupport.Uncompressed class method) (in module emod_api.serialization.dtkFileTools) compressed (emod_api.serialization.dtkFileTools.DtkFile property) compression (emod_api.serialization.dtkFileTools.DtkFile property) constant() (emod_api.utils.Distributions static method) ConstantDistribution (class in emod_api.demographics.PreDefinedDistributions) construct() (in module emod_api.demographics.service.grid_construction) ConstructNodesFromDataFrame() (in module emod_api.demographics.DemographicsInputDataParsers) copy() (emod_api.demographics.PreDefinedDistributions.ConstantDistribution method) creation_date (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property) CrudeRate (class in emod_api.demographics.DemographicsTemplates)

D

data (emod_api.channelreports.channels.Channel property) (emod_api.spatialreports.spatial.SpatialNode property) (emod_api.spatialreports.spatial.SpatialReport property) (emod_api.weather.weather.Weather property) (emod_api.weather.weather.WeatherNode property) datavalue_count (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property) DatavalueCount (emod_api.migration.migration.Layer property) (emod_api.migration.migration.Migration property) date (emod_api.serialization.dtkFileTools.DtkFile property) DateCreated (emod_api.migration.migration.Migration property) decode() (in module emod_api.peek_camp) decorate_actual_iv() (in module emod_api.peek_camp) decorate_actual_iv_impl() (in module emod_api.peek_camp) default_population (emod_api.demographics.Node.Node attribute) DefaultSusceptibilityDistribution() (in module emod_api.demographics.DemographicsTemplates) DelayedIntervention() (in module emod_api.interventions.common) Demographics (class in emod_api.demographics.Demographics) DemographicsBase (class in emod_api.demographics.Demographics) demographicsBuilder() (in module emod_api.demographics.DemographicsTemplates) DemographicsGenerator (class in emod_api.demographics.DemographicsGenerator) DemographicsOverlay (class in emod_api.demographics.Demographics) DemographicsTemplatesConstants (class in emod_api.demographics.DemographicsTemplates)

DemographicsType (class in emod_api.demographics.DemographicsGenerator) disable_warnings() (in module emod_api.schema_to_class) display() (in module emod_api.channelreports.plot_icj_means) Distributions (class in emod_api.utils) do_mapping_from_events() (in module emod_api.config.dtk_pre_process_adhocevents) do_nodes() (in module emod_api.interventions.utils) dtk_to_schema() (in module emod_api.schema.get_schema) dtk_version (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property) DtkFile (class in emod_api.serialization.dtkFileTools) DtkFile.Contents (class in emod_api.serialization.dtkFileTools) DtkFile.Objects (class in emod_api.serialization.dtkFileTools) DtkFileV1 (class in emod_api.serialization.dtkFileTools) DtkFileV2 (class in emod_api.serialization.dtkFileTools) DtkFileV2.NodesV2 (class in emod_api.serialization.dtkFileTools) DtkFileV3 (class in emod_api.serialization.dtkFileTools) DtkFileV3.NodesV3 (class in emod_api.serialization.dtkFileTools) DtkFileV4 (class in emod_api.serialization.dtkFileTools) DtkFileV5 (class in emod_api.serialization.dtkFileTools) DtkHeader (class in emod_api.serialization.dtkFileTools) DtkRate (class in emod_api.demographics.DemographicsTemplates) dual_constant() (emod_api.utils.Distributions static method) dual_exponential() (emod_api.utils.Distributions static method) duplicate_nodeID_check() (in module emod_api.demographics.DemographicsInputDataParsers)

E

EllZeeFour (class in emod_api.serialization.dtkFileSupport) emod_api module emod_api.campaign module emod_api.channelreports module emod_api.channelreports.channels module emod_api.channelreports.icj_to_csv module emod_api.channelreports.plot_icj_means module emod_api.channelreports.plot_prop_report module emod_api.channelreports.utils module emod_api.config module emod_api.config.default_from_schema module emod_api.config.default_from_schema_no_validation module emod_api.config.dtk_post_process_adhocevents module emod_api.config.dtk_pre_process_adhocevents module emod_api.config.dtk_pre_process_w5ml module emod_api.config.from_overrides module emod_api.config.from_poi_and_binary module emod_api.config.from_schema module emod_api.config.schema_to_config module emod_api.demographics module emod_api.demographics.BaseInputFile module emod_api.demographics.Demographics module emod_api.demographics.demographics_utils module emod_api.demographics.DemographicsGenerator module emod_api.demographics.DemographicsInputDataParsers module emod_api.demographics.DemographicsTemplates module emod_api.demographics.Node module emod_api.demographics.PreDefinedDistributions module emod_api.demographics.PropertiesAndAttributes module emod_api.demographics.service module emod_api.demographics.service.grid_construction module emod_api.demographics.service.service module emod_api.demographics.Updateable module emod_api.interventions module emod_api.interventions.ccdl module emod_api.interventions.ccdl_viz module

emod_api.interventions.common module emod_api.interventions.import_pressure module emod_api.interventions.migration module emod_api.interventions.node_multiplier module emod_api.interventions.outbreak module emod_api.interventions.simple_vaccine module emod_api.interventions.utils module emod_api.legacy module emod_api.legacy.plotAllCharts module emod_api.migration module emod_api.migration.client module emod_api.migration.client.client module emod_api.migration.migration module emod_api.multidim_plotter module emod_api.peek_camp module emod_api.schema module emod_api.schema.dtk_post_process_schema module emod_api.schema.get_schema module emod_api.schema_to_class module emod_api.serialization module emod_api.serialization.CensusAndModPop module emod_api.serialization.dtkFileSupport module emod_api.serialization.dtkFileTools module emod_api.serialization.dtkFileUtility module emod_api.serialization.SerializedPopulation module emod_api.spatialreports module emod_api.spatialreports.plot_spat_means module emod_api.spatialreports.spatial module emod_api.tabularoutput module emod_api.utils module emod_api.weather module emod_api.weather.weather module encode() (in module emod_api.peek_camp) EveryoneInitiallySusceptible() (in module emod_api.demographics.DemographicsTemplates) examine_file() (in module emod_api.migration.migration) experiment exponential() (emod_api.utils.Distributions static method)

F

FAMILY (emod_api.migration.migration.Migration attribute) FEMALE (emod_api.migration.migration.Migration attribute) fill_nodes_legacy() (in module emod_api.demographics.DemographicsInputDataParsers) finalize() (emod_api.schema_to_class.ReadOnlyDict method) find() (in module emod_api.serialization.SerializedPopulation) flattenConfig() (in module emod_api.config.from_overrides) flush() (emod_api.serialization.SerializedPopulation.SerializedPopulation method) from_csv() (emod_api.weather.weather.Weather class method) (in module emod_api.demographics.Demographics) (in module emod_api.migration.migration) from_data() (emod_api.demographics.Node.Node class method) from_dataframe() (in module emod_api.demographics.DemographicsGenerator) from_demog_and_param_gravity() (in module emod_api.migration.migration) from_demog_and_param_gravity_webservice() (in module emod_api.migration.migration)

from_dict() (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution method) (emod_api.demographics.PropertiesAndAttributes.NodeAttributes method) from_file() (emod_api.weather.weather.Metadata class method) (in module emod_api.demographics.Demographics) (in module emod_api.demographics.DemographicsGenerator) (in module emod_api.migration.migration) from_params() (in module emod_api.demographics.Demographics) (in module emod_api.migration.migration) from_pop_csv() (in module emod_api.demographics.Demographics) from_pop_raster_csv() (in module emod_api.demographics.Demographics) from_template_node() (in module emod_api.demographics.Demographics) FullRisk() (in module emod_api.demographics.DemographicsTemplates)

G

gaussian() (emod_api.utils.Distributions static method) GenderDataType (emod_api.migration.migration.Migration property) generate_demographics() (emod_api.demographics.DemographicsGenerator.DemographicsGenerator method) generate_file() (emod_api.demographics.BaseInputFile.BaseInputFile method) (emod_api.demographics.Demographics.Demographics method) generate_headers() (emod_api.demographics.BaseInputFile.BaseInputFile method) generate_metadata() (emod_api.demographics.DemographicsGenerator.DemographicsGenerator method) generate_nodes() (emod_api.demographics.DemographicsGenerator.DemographicsGenerator method) get_adhocs() (in module emod_api.campaign) get_ages() (in module emod_api.peek_camp) get_bbox() (in module emod_api.demographics.service.grid_construction) get_class_with_defaults() (in module emod_api.schema_to_class) get_colour_from_event() (in module emod_api.interventions.ccdl_viz) get_config_from_default_and_params() (in module emod_api.config.default_from_schema_no_validation) get_default_config_from_schema() (in module emod_api.config.default_from_schema_no_validation) get_dtk_rate() (emod_api.demographics.DemographicsTemplates.CrudeRate method) get_event() (in module emod_api.campaign) get_fert_dist() (in module emod_api.demographics.DemographicsTemplates) get_fert_dist_from_rates() (in module emod_api.demographics.DemographicsTemplates) get_grid_cell_id() (in module emod_api.demographics.service.grid_construction)

get_ip() (in module emod_api.peek_camp) get_next_individual_suid() (emod_api.serialization.SerializedPopulation.SerializedPopulation method) get_next_infection_suid() (emod_api.serialization.SerializedPopulation.SerializedPopulation method) get_nickname_from_event() (in module emod_api.interventions.ccdl_viz) get_node() (emod_api.demographics.Demographics.DemographicsBase method) get_node_ids_from_file() (in module emod_api.demographics.Demographics) get_node_offsets() (emod_api.migration.migration.Migration method) get_node_pops_from_params() (in module emod_api.demographics.Demographics) get_parameters() (in module emod_api.serialization.SerializedPopulation) get_recv_trigger() (in module emod_api.campaign) get_report_channels() (in module emod_api.channelreports.utils) get_schema() (in module emod_api.campaign) (in module emod_api.schema_to_class) get_send_trigger() (in module emod_api.campaign) get_shape_from_event() (in module emod_api.interventions.ccdl_viz) get_trigger_list() (in module emod_api.campaign) get_waning_from_parameters() (in module emod_api.interventions.utils) get_waning_from_params() (in module emod_api.interventions.utils) get_waning_from_points() (in module emod_api.interventions.utils) get_xpix_ypix() (in module emod_api.demographics.Node)

H

handle_di() (in module emod_api.peek_camp) Header (class in emod_api.channelreports.channels) header (emod_api.channelreports.channels.ChannelReport property) (emod_api.serialization.dtkFileTools.DtkFile property)

high-performance computing (HPC) HSB() (in module emod_api.interventions.common)

I

id (emod_api.demographics.Node.Node property) (emod_api.spatialreports.spatial.SpatialNode property) (emod_api.weather.weather.WeatherNode property) id_reference (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property) IDREF_GRUMP1DEGREE (emod_api.migration.migration.Migration attribute) IDREF_GRUMP2PT5ARCMIN (emod_api.migration.migration.Migration attribute) IDREF_GRUMP30ARCSEC (emod_api.migration.migration.Migration attribute) IDREF_LEGACY (emod_api.migration.migration.Migration attribute) IdReference (emod_api.migration.migration.Migration property) IndividualAttributes (class in emod_api.demographics.PropertiesAndAttributes) IndividualAttributes.AgeDistribution (class in emod_api.demographics.PropertiesAndAttributes) IndividualAttributes.FertilityDistribution (class in emod_api.demographics.PropertiesAndAttributes) IndividualAttributes.MortalityDistribution (class in emod_api.demographics.PropertiesAndAttributes) IndividualAttributes.SusceptibilityDistribution (class in emod_api.demographics.PropertiesAndAttributes)

IndividualProperties (class in emod_api.demographics.PropertiesAndAttributes) IndividualProperty (class in emod_api.demographics.PropertiesAndAttributes) infer_natural_mortality() (emod_api.demographics.Demographics.DemographicsBase method) init_resolution_from_file() (emod_api.demographics.Node.Node class method) InitAgeUniform() (in module emod_api.demographics.DemographicsTemplates) InitPrevUniform() (in module emod_api.demographics.DemographicsTemplates) InitRiskExponential() (in module emod_api.demographics.DemographicsTemplates) InitRiskLogNormal() (in module emod_api.demographics.DemographicsTemplates) InitRiskUniform() (in module emod_api.demographics.DemographicsTemplates) InitSusceptConstant() (in module emod_api.demographics.DemographicsTemplates) inset_chart_json_to_csv_dataframe_pd() (in module emod_api.channelreports.icj_to_csv) InterpolationType (emod_api.migration.migration.Migration property) interval (emod_api.spatialreports.spatial.SpatialReport property) INTERVENTION (emod_api.migration.migration.Migration attribute) InvalidResolution

L

lat (emod_api.demographics.Node.Node property) lat_lon_from_nodeid() (in module emod_api.demographics.Node) Layer (class in emod_api.migration.migration) LINEAR_INTERPOLATION (emod_api.migration.migration.Migration attribute) list_channels_and_ips() (in module emod_api.channelreports.plot_prop_report)

load_default_config_as_rod() (in module emod_api.config.default_from_schema_no_validation) LOCAL (emod_api.migration.migration.Migration attribute) log_normal() (emod_api.utils.Distributions static method) lon (emod_api.demographics.Node.Node property) lon_lat_2_point() (in module emod_api.demographics.service.grid_construction)

M

main() (in module emod_api.channelreports.plot_prop_report) (in module emod_api.legacy.plotAllCharts) make_config_from_poi() (in module emod_api.config.from_poi_and_binary) make_config_from_poi_and_config_dict() (in module emod_api.config.from_poi_and_binary) make_config_from_poi_and_config_file() (in module emod_api.config.from_poi_and_binary) make_config_from_poi_and_schema() (in module emod_api.config.from_poi_and_binary) MALE (emod_api.migration.migration.Migration attribute) MAX_AGE (emod_api.migration.migration.Migration attribute) Metadata (class in emod_api.weather.weather) metadata (emod_api.weather.weather.Weather property) Migration (class in emod_api.migration.migration) MigrationType (emod_api.migration.migration.Migration property) module emod_api emod_api.campaign emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.demographics_utils emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.Updateable emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.multidim_plotter emod_api.peek_camp emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.schema_to_class emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.serialization.SerializedPopulation emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.utils emod_api.weather emod_api.weather.weather

Mortality_Rates_Mod30_5yrs_Xval (emod_api.demographics.DemographicsTemplates.DemographicsTemplatesConstants attribute) MortalityRateByAge() (in module emod_api.demographics.DemographicsTemplates) MortalityStructureNigeriaDHS() (in module emod_api.demographics.DemographicsTemplates) MultiInterventionDistributor() (in module emod_api.interventions.common)

N

new_intervention() (in module emod_api.interventions.import_pressure) (in module emod_api.interventions.node_multiplier) (in module emod_api.interventions.outbreak) (in module emod_api.interventions.simple_vaccine) new_intervention2() (in module emod_api.interventions.simple_vaccine) new_intervention_as_file() (in module emod_api.interventions.import_pressure) (in module emod_api.interventions.node_multiplier) (in module emod_api.interventions.outbreak) (in module emod_api.interventions.simple_vaccine) new_scheduled_event() (in module emod_api.interventions.node_multiplier) NLHTI() (in module emod_api.interventions.common) Node (class in emod_api.demographics.Node) node_count (emod_api.demographics.Demographics.DemographicsBase property) (emod_api.spatialreports.spatial.SpatialReport property) (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property) node_ID_from_lat_long() (in module emod_api.demographics.DemographicsInputDataParsers) node_ids (emod_api.demographics.Demographics.DemographicsBase property) (emod_api.spatialreports.spatial.SpatialReport property) (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property)

NodeAttributes (class in emod_api.demographics.PropertiesAndAttributes) NodeCount (emod_api.migration.migration.Layer property) (emod_api.migration.migration.Migration property) nodeid_from_lat_lon() (in module emod_api.demographics.Node) NodeOffsets (emod_api.migration.migration.Migration property) nodes (emod_api.demographics.Demographics.DemographicsBase property) Nodes (emod_api.migration.migration.Migration property) nodes (emod_api.serialization.dtkFileTools.DtkFile property) (emod_api.serialization.SerializedPopulation.SerializedPopulation property) (emod_api.spatialreports.spatial.SpatialReport property) (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property) nodes_for_DTK() (in module emod_api.demographics.Node) NoInitialPrevalence() (in module emod_api.demographics.DemographicsTemplates) NoRisk() (in module emod_api.demographics.DemographicsTemplates) NullPtr (class in emod_api.serialization.dtkFileSupport) num_channels (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property) num_time_steps (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property)

O

ONE_FOR_EACH_GENDER (emod_api.migration.migration.Migration attribute)

OverlayNode (class in emod_api.demographics.Node)

P

params_to_dict() (in module emod_api.peek_camp) PIECEWISE_CONSTANT (emod_api.migration.migration.Migration attribute) plot() (in module emod_api.spatialreports.plot_spat_means) plot_from_sql() (in module emod_api.multidim_plotter) plot_traces() (in module emod_api.channelreports.utils) plotBunch() (in module emod_api.legacy.plotAllCharts) plotCompareFromDisk() (in module emod_api.legacy.plotAllCharts) plotOneFromDisk() (in module emod_api.legacy.plotAllCharts)

point_2_grid_cell_id_lookup() (in module emod_api.demographics.service.grid_construction) poisson() (emod_api.utils.Distributions static method) pop (emod_api.demographics.Node.Node property) process_cmd_line() (in module emod_api.channelreports.plot_prop_report) prop_report_json_to_csv() (in module emod_api.channelreports.plot_prop_report) property_report_to_csv() (in module emod_api.channelreports.utils) PropertyValueChanger() (in module emod_api.interventions.common) provenance (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property)

R

read() (in module emod_api.serialization.dtkFileTools) read_json_file() (in module emod_api.channelreports.utils) ReadOnlyDict (class in emod_api.schema_to_class) recurser() (in module emod_api.schema.dtk_post_process_schema) REGIONAL (emod_api.migration.migration.Migration attribute) report_type (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property)

report_version (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property) res_in_degrees (emod_api.demographics.Node.Node attribute) reset() (in module emod_api.campaign) run() (in module emod_api.migration.client.client)

S

SAME_FOR_BOTH_GENDERS (emod_api.migration.migration.Migration attribute) save() (in module emod_api.campaign) save_to_csv() (in module emod_api.channelreports.utils) ScheduledCampaignEvent() (in module emod_api.interventions.common) schema_to_config() (in module emod_api.config.from_poi_and_binary) schema_to_config_subnode() (in module emod_api.config.default_from_schema_no_validation) SchemaConfigBuilder (class in emod_api.config.from_schema) (class in emod_api.config.schema_to_config) SEA (emod_api.migration.migration.Migration attribute) seed() (in module emod_api.interventions.outbreak) seed_by_coverage() (in module emod_api.interventions.outbreak) send() (emod_api.demographics.Demographics.DemographicsBase method) SerializedPopulation (class in emod_api.serialization.SerializedPopulation) SerialObject (class in emod_api.serialization.dtkFileSupport) set_beautifiers() (in module emod_api.interventions.ccdl_viz) set_demog_distributions() (in module emod_api.demographics.demographics_utils) set_distribution_parameters() (emod_api.utils.Distributions static method) set_growing_demographics() (in module emod_api.demographics.demographics_utils) set_immune_mod() (in module emod_api.demographics.demographics_utils) set_resolution() (emod_api.demographics.DemographicsGenerator.DemographicsGenerator method) set_risk_mod() (in module emod_api.demographics.demographics_utils) set_schema() (emod_api.schema_to_class.ReadOnlyDict method) (in module emod_api.campaign) (in module emod_api.config.from_poi_and_binary) set_static_demographics() (in module emod_api.demographics.demographics_utils) SetAgeDistribution() (emod_api.demographics.Demographics.DemographicsBase method) SetBirthRate() (emod_api.demographics.Demographics.DemographicsBase method) SetConstantRisk() (emod_api.demographics.Demographics.DemographicsBase method) SetConstantSusceptibility() (emod_api.demographics.Demographics.DemographicsBase method) SetDefaultFromTemplate() (emod_api.demographics.Demographics.DemographicsBase method) SetDefaultIndividualAttributes() (emod_api.demographics.Demographics.DemographicsBase method) SetDefaultIndividualProperties() (emod_api.demographics.Demographics.DemographicsBase method) SetDefaultNodeAttributes() (emod_api.demographics.Demographics.DemographicsBase method) SetDefaultProperties() (emod_api.demographics.Demographics.DemographicsBase method) SetDefaultPropertiesFertMort() (emod_api.demographics.Demographics.DemographicsBase method) SetEquilibriumAgeDistFromBirthAndMortRates() (emod_api.demographics.Demographics.DemographicsBase method) SetEquilibriumVitalDynamics() (emod_api.demographics.Demographics.DemographicsBase method)

SetEquilibriumVitalDynamicsFromWorldBank() (emod_api.demographics.Demographics.DemographicsBase method) SetFertilityOverTimeFromParams() (emod_api.demographics.Demographics.DemographicsBase method) SetHeteroRiskExponDist() (emod_api.demographics.Demographics.DemographicsBase method) SetHeteroRiskLognormalDist() (emod_api.demographics.Demographics.DemographicsBase method) SetHeteroRiskUniformDist() (emod_api.demographics.Demographics.DemographicsBase method) SetIndividualAttributesWithFertMort() (emod_api.demographics.Demographics.DemographicsBase method) SetInitialAgeExponential() (emod_api.demographics.Demographics.DemographicsBase method) SetInitialAgeLikeSubSaharanAfrica() (emod_api.demographics.Demographics.DemographicsBase method) SetInitPrevFromUniformDraw() (emod_api.demographics.Demographics.DemographicsBase method) SetMigrationPattern() (emod_api.demographics.Demographics.DemographicsBase method) SetMinimalNodeAttributes() (emod_api.demographics.Demographics.DemographicsBase method) SetMortalityDistribution() (emod_api.demographics.Demographics.DemographicsBase method) SetMortalityDistributionFemale() (emod_api.demographics.Demographics.DemographicsBase method) SetMortalityDistributionMale() (emod_api.demographics.Demographics.DemographicsBase method) SetMortalityOverTimeFromData() (emod_api.demographics.Demographics.DemographicsBase method) SetMortalityRate() (emod_api.demographics.Demographics.DemographicsBase method) SetNodeDefaultFromTemplate() (emod_api.demographics.Demographics.DemographicsBase method) SetOneWayMigration() (emod_api.demographics.Demographics.DemographicsBase method) SetOverdispersion() (emod_api.demographics.Demographics.DemographicsBase method) SetRoundTripMigration() (emod_api.demographics.Demographics.DemographicsBase method) SetSimpleVitalDynamics() (emod_api.demographics.Demographics.DemographicsBase method) SetVitalDynamicsFromTemplate() (emod_api.demographics.Demographics.DemographicsBase method) SetVitalDynamicsFromWHOFile() (emod_api.demographics.Demographics.DemographicsBase method) SimpleSusceptibilityDistribution() (in module emod_api.demographics.DemographicsTemplates) simulation (emod_api.serialization.dtkFileTools.DtkFileV1 property) (emod_api.serialization.dtkFileTools.DtkFileV2 property) (emod_api.serialization.dtkFileTools.DtkFileV3 property) Snappy (class in emod_api.serialization.dtkFileSupport) SpatialNode (class in emod_api.spatialreports.spatial) SpatialReport (class in emod_api.spatialreports.spatial) StandardDiagnostic() (in module emod_api.interventions.common) start (emod_api.spatialreports.spatial.SpatialReport property) start_time (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property) STATIC (emod_api.demographics.DemographicsGenerator.DemographicsType attribute) step_size (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property) StepFunctionSusceptibility() (in module emod_api.demographics.DemographicsTemplates)

T

task template time_stamp (emod_api.channelreports.channels.ChannelReport property) (emod_api.channelreports.channels.Header property) time_steps (emod_api.spatialreports.spatial.SpatialReport property) title (emod_api.channelreports.channels.Channel property) to_csv() (emod_api.channelreports.channels.ChannelReport method) (in module emod_api.migration.migration) to_dict() (emod_api.demographics.Demographics.Demographics method) (emod_api.demographics.Demographics.DemographicsOverlay method) (emod_api.demographics.Node.Node method) (emod_api.demographics.PreDefinedDistributions.ConstantDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualAttributes.SusceptibilityDistribution method) (emod_api.demographics.PropertiesAndAttributes.IndividualProperties method) (emod_api.demographics.PropertiesAndAttributes.IndividualProperty method) (emod_api.demographics.PropertiesAndAttributes.NodeAttributes method) (emod_api.demographics.Updateable.Updateable method)

to_file() (emod_api.demographics.Demographics.DemographicsOverlay method) (emod_api.migration.migration.Migration method) (emod_api.schema_to_class.ReadOnlyDict method) to_tuple() (emod_api.demographics.Node.Node method) Tool (emod_api.migration.migration.Migration property) tool (emod_api.serialization.dtkFileTools.DtkFile property) triggered_campaign_delay_event() (in module emod_api.interventions.common) triggered_campaign_event_with_optional_delay() (in module emod_api.interventions.common) TriggeredCampaignEvent() (in module emod_api.interventions.common)

U

uncompress() (emod_api.serialization.dtkFileSupport.EllZeeFour class method) (emod_api.serialization.dtkFileSupport.Snappy class method) (emod_api.serialization.dtkFileSupport.Uncompressed class method) (in module emod_api.serialization.dtkFileTools) Uncompressed (class in emod_api.serialization.dtkFileSupport) uniform() (emod_api.utils.Distributions static method)

units (emod_api.channelreports.channels.Channel property) update() (emod_api.demographics.Updateable.Updateable method) update_resolution (emod_api.weather.weather.Metadata property) (emod_api.weather.weather.Weather property) Updateable (class in emod_api.demographics.Updateable) uses_old_waning() (in module emod_api.schema_to_class)

V

validate_res_in_arcsec() (in module emod_api.demographics.DemographicsGenerator)

version (emod_api.serialization.dtkFileTools.DtkFile property) viz() (in module emod_api.interventions.ccdl_viz)

W

Weather (class in emod_api.weather.weather) WeatherNode (class in emod_api.weather.weather) weibull() (emod_api.utils.Distributions static method) write() (emod_api.serialization.SerializedPopulation.SerializedPopulation method) (in module emod_api.serialization.dtkFileTools) write_config_from_default_and_params() (in module emod_api.config.default_from_schema_no_validation)

write_default_from_schema() (in module emod_api.config.default_from_schema) (in module emod_api.config.default_from_schema_no_validation) write_file() (emod_api.channelreports.channels.ChannelReport method) (emod_api.spatialreports.spatial.SpatialReport method) (emod_api.weather.weather.Metadata method) (emod_api.weather.weather.Weather method)

X

xpix_ypix_from_lat_lon() (in module emod_api.demographics.Node)

Y

YearlyRate (class in emod_api.demographics.DemographicsTemplates)