Index A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | W A add_climate_files() (emodpy.emod_file.ClimateFiles method) add_demographics_from_dict() (emodpy.emod_file.DemographicsFiles method) add_demographics_from_file() (emodpy.emod_file.DemographicsFiles method) add_dll() (emodpy.reporters.base.Reporters method) add_dll_folder() (emodpy.reporters.base.Reporters method) add_ep4_from_path() (in module emodpy.emod_task) add_event() (emodpy.emod_campaign.EMODCampaign method) add_events() (emodpy.emod_campaign.EMODCampaign method) add_migration_from_file() (emodpy.emod_file.MigrationFiles method) add_py_path() (emodpy.emod_task.EMODTask method) add_reporter() (emodpy.reporters.base.Reporters method) add_serialization_timesteps() (in module emodpy.generic.serialization) AdultVectorsAnalyzer (class in emodpy.analyzers.adult_vectors_analyzer) Age_Bins (emodpy.reporters.builtin.ReportNodeDemographics attribute) age_bins (emodpy.reporters.custom.ReportAgeAtInfectionHistogramPlugin attribute) AIR (emodpy.emod_file.MigrationTypes attribute) AIR_TEMPERATURE (emodpy.emod_file.ClimateFileType attribute) ALL (emodpy.utils.BambooArtifact attribute) application() (in module emodpy.defaults.ep4.dtk_in_process) (in module emodpy.defaults.ep4.dtk_post_process) (in module emodpy.defaults.ep4.dtk_pre_process) asset collection assets B bamboo_api_login() (in module emodpy.utils) bamboo_connection() (in module emodpy.bamboo_api_utils) BambooArtifact (class in emodpy.utils) BambooConnection (class in emodpy.bamboo_api_utils) BaseReporter (class in emodpy.reporters.base) build_passed() (emodpy.bamboo_api_utils.BuildInfo class method) BuildArtifacts (class in emodpy.bamboo_api_utils) builder BuildInfo (class in emodpy.bamboo_api_utils) BuildPlans (class in emodpy.bamboo_api_utils) BuiltInReporter (class in emodpy.reporters.base) C cache_experiment_metadata_in_sql() (emodpy.emod_task.EMODTask class method) campaign (emodpy.emod_task.EMODTask attribute) campaign() (emodpy.defaults.emod_sir.EMODSir static method) (emodpy.defaults.iemod_default.IEMODDefault method) (emodpy.interventions.emod_empty_campaign.EMODEmptyCampaign static method) class_name (emodpy.reporters.base.BuiltInReporter attribute) (emodpy.reporters.builtin.ReportNodeDemographics attribute) clear() (emodpy.emod_campaign.EMODCampaign method) climate (emodpy.emod_task.EMODTask attribute) CLIMATE_BY_DATA (emodpy.emod_file.ClimateModel attribute) CLIMATE_CONSTANT (emodpy.emod_file.ClimateModel attribute) CLIMATE_KOPPEN (emodpy.emod_file.ClimateModel attribute) CLIMATE_OFF (emodpy.emod_file.ClimateModel attribute) ClimateFiles (class in emodpy.emod_file) ClimateFileType (class in emodpy.emod_file) ClimateModel (class in emodpy.emod_file) config (emodpy.emod_task.EMODTask attribute) config() (emodpy.defaults.emod_sir.EMODSir static method) (emodpy.defaults.iemod_default.IEMODDefault method) (emodpy.reporters.builtin.ReportHumanMigrationTracking method) config_file_name (emodpy.emod_task.EMODTask attribute) configure_report() (emodpy.reporters.custom.ReportEventCounter method) (emodpy.reporters.custom.ReportNodeDemographics method) convert_plugin_reports() (in module emodpy.defaults.ep4.dtk_pre_process) copy_simulation() (emodpy.emod_task.EMODTask method) create_campaign_from_callback() (emodpy.emod_task.EMODTask method) create_demog_from_callback() (emodpy.emod_task.EMODTask method) CustomReporter (class in emodpy.reporters.base) cut_iterable_to() (in module emodpy.collections_utils) D data_group_names (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer attribute) deep_del() (in module emodpy.collections_utils) deep_get() (in module emodpy.collections_utils) deep_set() (in module emodpy.collections_utils) default_ep4_fn() (in module emodpy.emod_task) default_filter_fn() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) default_group_fn() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) default_plot_fn() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) default_select_fn() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) demographics (emodpy.emod_task.EMODTask attribute) demographics() (emodpy.defaults.emod_sir.EMODSir static method) (emodpy.defaults.iemod_default.IEMODDefault method) DemographicsFiles (class in emodpy.emod_file) DENGUE (emodpy.utils.EradicationBambooBuilds attribute) DENGUE_LINUX (emodpy.utils.EradicationBambooBuilds attribute) DENGUE_WIN (emodpy.utils.EradicationBambooBuilds attribute) dev_mode (in module emodpy.emod_task) disable() (emodpy.reporters.base.CustomReporter method) dll_file (emodpy.reporters.base.CustomReporter attribute) (emodpy.reporters.custom.ReportAgeAtInfectionHistogramPlugin attribute) (emodpy.reporters.custom.ReportEventCounter attribute) (emodpy.reporters.custom.ReportHumanMigrationTracking attribute) (emodpy.reporters.custom.ReportNodeDemographics attribute) download_artifact_to_file() (emodpy.bamboo_api_utils.BuildArtifacts class method) download_artifacts_to_path() (emodpy.bamboo_api_utils.BuildArtifacts class method) download_bamboo_artifacts() (in module emodpy.utils) download_eradication() (in module emodpy.utils) download_eradication_exe() (emodpy.bamboo_api_utils.BuildArtifacts class method) download_file() (emodpy.bamboo_api_utils.BambooConnection method) download_from_bamboo_url() (emodpy.bamboo_api_utils.BuildArtifacts class method) download_from_url() (in module emodpy.utils) download_latest_bamboo() (in module emodpy.utils) download_latest_eradication() (in module emodpy.utils) download_latest_good_Eradication_exe() (emodpy.bamboo_api_utils.BuildArtifacts class method) download_latest_good_schema_json() (emodpy.bamboo_api_utils.BuildArtifacts class method) download_latest_reporters() (in module emodpy.utils) download_latest_schema() (in module emodpy.utils) download_schema_json() (emodpy.bamboo_api_utils.BuildArtifacts class method) E EMOD_RELEASE (emodpy.utils.EradicationBambooBuilds attribute) EMODCampaign (class in emodpy.emod_campaign) EMODEmptyCampaign (class in emodpy.interventions.emod_empty_campaign) emodpy module emodpy.analyzers module emodpy.analyzers.adult_vectors_analyzer module emodpy.analyzers.population_analyzer module emodpy.analyzers.timeseries_analyzer module emodpy.bamboo module emodpy.bamboo_api_utils module emodpy.collections_utils module emodpy.defaults module emodpy.defaults.emod_sir module emodpy.defaults.ep4 module emodpy.defaults.ep4.dtk_in_process module emodpy.defaults.ep4.dtk_post_process module emodpy.defaults.ep4.dtk_pre_process module emodpy.defaults.iemod_default module emodpy.emod_campaign module emodpy.emod_file module emodpy.emod_task module emodpy.generic module emodpy.generic.serialization module emodpy.interventions module emodpy.interventions.emod_empty_campaign module emodpy.reporters module emodpy.reporters.base module emodpy.reporters.builtin module emodpy.reporters.custom module emodpy.utils module EMODSir (class in emodpy.defaults.emod_sir) EMODTask (class in emodpy.emod_task) EMODTaskSpecification (class in emodpy.emod_task) empty (emodpy.reporters.base.Reporters property) enable() (emodpy.reporters.base.CustomReporter method) enable_migration() (emodpy.emod_file.MigrationFiles method) enable_serialization() (in module emodpy.generic.serialization) Enabled (emodpy.reporters.base.BuiltInReporter attribute) (emodpy.reporters.base.CustomReporter attribute) ensure_logged_in() (emodpy.bamboo_api_utils.BambooConnection method) ERADICATION (emodpy.utils.BambooArtifact attribute) ERADICATION_EXE (emodpy.bamboo_api_utils.BuildArtifacts attribute) eradication_path (emodpy.emod_task.EMODTask attribute) EradicationBambooBuilds (class in emodpy.utils) EradicationPlatformExtension (class in emodpy.utils) experiment export_spec() (emodpy.bamboo_api_utils.BuildPlans static method) F FAMILY (emodpy.emod_file.MigrationTypes attribute) filter() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) find_all_artifact_names() (emodpy.bamboo_api_utils.BuildArtifacts class method) find_all_artifacts() (emodpy.bamboo_api_utils.BuildArtifacts class method) find_artifacts() (emodpy.bamboo_api_utils.BuildArtifacts class method) find_artifacts_by_name() (emodpy.bamboo_api_utils.BuildArtifacts class method) find_build_essential_artifacts() (emodpy.bamboo_api_utils.BuildArtifacts class method) find_server() (emodpy.bamboo_api_utils.BambooConnection method) FIXED_RATE_MIGRATION (emodpy.emod_file.MigrationModel attribute) FP (emodpy.utils.EradicationBambooBuilds attribute) FP_LINUX (emodpy.utils.EradicationBambooBuilds attribute) FP_WIN (emodpy.utils.EradicationBambooBuilds attribute) from_default2() (emodpy.emod_task.EMODTask class method) from_dict() (emodpy.reporters.base.BaseReporter method) (emodpy.reporters.base.BuiltInReporter method) from_files() (emodpy.emod_task.EMODTask class method) G gather_assets() (emodpy.emod_file.ClimateFiles method) (emodpy.emod_file.InputFilesList method) (emodpy.emod_file.MigrationFiles method) (emodpy.reporters.base.Reporters method) gather_common_assets() (emodpy.emod_task.EMODTask method) gather_transient_assets() (emodpy.emod_task.EMODTask method) GENERIC (emodpy.utils.EradicationBambooBuilds attribute) GENERIC_LINUX (emodpy.utils.EradicationBambooBuilds attribute) GENERIC_WIN (emodpy.utils.EradicationBambooBuilds attribute) get() (emodpy.emod_task.EMODTaskSpecification method) get_bamboo_api_url() (emodpy.bamboo_api_utils.BambooConnection method) get_bamboo_url() (emodpy.bamboo_api_utils.BambooConnection method) get_build_info() (emodpy.bamboo_api_utils.BuildInfo static method) get_channel_data() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) get_description() (emodpy.emod_task.EMODTaskSpecification method) get_events_at() (emodpy.emod_campaign.EMODCampaign method) get_events_with_name() (emodpy.emod_campaign.EMODCampaign method) get_example_urls() (emodpy.emod_task.EMODTaskSpecification method) get_file_from_comps() (emodpy.emod_task.EMODTask class method) get_github_eradication_url() (in module emodpy.utils) get_latest_build() (emodpy.bamboo_api_utils.BuildInfo class method) get_latest_successful_build() (emodpy.bamboo_api_utils.BuildInfo class method) get_model_files() (in module emodpy.bamboo) get_parameter() (emodpy.emod_task.EMODTask method) get_plans_for_project() (emodpy.bamboo_api_utils.BuildPlans static method) get_server_url() (emodpy.bamboo_api_utils.BambooConnection method) get_type() (emodpy.emod_task.EMODTaskSpecification method) get_version() (emodpy.emod_task.EMODTaskSpecification method) H handle_experiment_completion() (emodpy.emod_task.EMODTask class method) handle_implicit_configs() (emodpy.emod_task.EMODTask method) high-performance computing (HPC) HIV (emodpy.utils.EradicationBambooBuilds attribute) HIV_LINUX (emodpy.utils.EradicationBambooBuilds attribute) HIV_WIN (emodpy.utils.EradicationBambooBuilds attribute) I IEMODDefault (class in emodpy.defaults.iemod_default) implicit_configs (emodpy.emod_task.EMODTask attribute) initialize() (emodpy.analyzers.adult_vectors_analyzer.AdultVectorsAnalyzer method) (emodpy.analyzers.population_analyzer.PopulationAnalyzer method) (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) InputFilesList (class in emodpy.emod_file) interval_years (emodpy.reporters.custom.ReportAgeAtInfectionHistogramPlugin attribute) is_linux (emodpy.emod_task.EMODTask attribute) J json (emodpy.emod_campaign.EMODCampaign property) (emodpy.reporters.base.Reporters property) L LAND_TEMPERATURE (emodpy.emod_file.ClimateFileType attribute) LINUX (emodpy.utils.EradicationPlatformExtension attribute) load_files() (emodpy.emod_task.EMODTask method) load_from_dict() (emodpy.emod_campaign.EMODCampaign static method) load_from_file() (emodpy.emod_campaign.EMODCampaign static method) load_serialized_population() (in module emodpy.generic.serialization) load_session_cookie() (emodpy.bamboo_api_utils.BambooConnection method) LOCAL (emodpy.emod_file.MigrationTypes attribute) login() (emodpy.bamboo_api_utils.BambooConnection method) (in module emodpy.bamboo_api_utils) login_session_exists() (emodpy.bamboo_api_utils.BambooConnection method) M make_api_get_request() (emodpy.bamboo_api_utils.BambooConnection method) make_exe_executable() (emodpy.bamboo_api_utils.BuildArtifacts class method) make_get_request() (emodpy.bamboo_api_utils.BambooConnection method) MALARIA (emodpy.utils.EradicationBambooBuilds attribute) MALARIA_LINUX (emodpy.utils.EradicationBambooBuilds attribute) MALARIA_WIN (emodpy.utils.EradicationBambooBuilds attribute) map() (emodpy.analyzers.adult_vectors_analyzer.AdultVectorsAnalyzer method) (emodpy.analyzers.population_analyzer.PopulationAnalyzer method) (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) merge_with() (emodpy.emod_file.MigrationFiles method) MigrationFiles (class in emodpy.emod_file) MigrationModel (class in emodpy.emod_file) MigrationPattern (class in emodpy.emod_file) migrations (emodpy.emod_task.EMODTask attribute) MigrationTypes (class in emodpy.emod_file) module emodpy emodpy.analyzers emodpy.analyzers.adult_vectors_analyzer emodpy.analyzers.population_analyzer emodpy.analyzers.timeseries_analyzer emodpy.bamboo emodpy.bamboo_api_utils emodpy.collections_utils emodpy.defaults emodpy.defaults.emod_sir emodpy.defaults.ep4 emodpy.defaults.ep4.dtk_in_process emodpy.defaults.ep4.dtk_post_process emodpy.defaults.ep4.dtk_pre_process emodpy.defaults.iemod_default emodpy.emod_campaign emodpy.emod_file emodpy.emod_task emodpy.generic emodpy.generic.serialization emodpy.interventions emodpy.interventions.emod_empty_campaign emodpy.reporters emodpy.reporters.base emodpy.reporters.builtin emodpy.reporters.custom emodpy.utils N name (emodpy.reporters.base.CustomReporter attribute) (emodpy.reporters.custom.ReportAgeAtInfectionHistogramPlugin attribute) (emodpy.reporters.custom.ReportEventCounter attribute) (emodpy.reporters.custom.ReportHumanMigrationTracking attribute) (emodpy.reporters.custom.ReportNodeDemographics attribute) NO_MIGRATION (emodpy.emod_file.MigrationModel attribute) normalize_url() (emodpy.bamboo_api_utils.BambooConnection method) O ordered_levels (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer attribute) output_file (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer attribute) P parameters (emodpy.reporters.base.BuiltInReporter attribute) (emodpy.reporters.builtin.ReportHumanMigrationTracking attribute) plot_by_channel() (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) PLUGINS (emodpy.utils.BambooArtifact attribute) PopulationAnalyzer (class in emodpy.analyzers.population_analyzer) pre_creation() (emodpy.emod_task.EMODTask method) Pretty_Format (emodpy.reporters.base.BuiltInReporter attribute) process_simulation() (emodpy.defaults.iemod_default.IEMODDefault method) py_path_list (emodpy.emod_task.EMODTask attribute) R RAINFALL (emodpy.emod_file.ClimateFileType attribute) RANDOM_WALK_DIFFUSION (emodpy.emod_file.MigrationPattern attribute) read_config_file() (emodpy.emod_file.ClimateFiles method) (emodpy.emod_file.MigrationFiles method) read_custom_reports_file() (emodpy.reporters.base.Reporters method) reduce() (emodpy.analyzers.adult_vectors_analyzer.AdultVectorsAnalyzer method) (emodpy.analyzers.population_analyzer.PopulationAnalyzer method) (emodpy.analyzers.timeseries_analyzer.TimeseriesAnalyzer method) REGIONAL (emodpy.emod_file.MigrationTypes attribute) RELATIVE_HUMIDITY (emodpy.emod_file.ClimateFileType attribute) RELEASE (emodpy.utils.EradicationBambooBuilds attribute) reload_from_simulation() (emodpy.emod_task.EMODTask method) ReportAgeAtInfectionHistogramPlugin (class in emodpy.reporters.custom) REPORTER_PLUGINS (emodpy.bamboo_api_utils.BuildArtifacts attribute) Reporters (class in emodpy.reporters.base) reporters (emodpy.emod_task.EMODTask attribute) ReportEventCounter (class in emodpy.reporters.custom) ReportHumanMigrationTracking (class in emodpy.reporters.builtin) (class in emodpy.reporters.custom) ReportNodeDemographics (class in emodpy.reporters.builtin) (class in emodpy.reporters.custom) Reports (emodpy.reporters.base.CustomReporter attribute) (emodpy.reporters.custom.ReportAgeAtInfectionHistogramPlugin attribute) (emodpy.reporters.custom.ReportHumanMigrationTracking attribute) S save_bamboo_credentials() (in module emodpy.utils) save_credentials() (emodpy.bamboo_api_utils.BambooConnection method) (in module emodpy.bamboo_api_utils) SCHEMA (emodpy.utils.BambooArtifact attribute) SCHEMA_JSON (emodpy.bamboo_api_utils.BuildArtifacts attribute) SEA (emodpy.emod_file.MigrationTypes attribute) server (emodpy.bamboo_api_utils.BambooConnection property) session_cookie (emodpy.bamboo_api_utils.BambooConnection property) session_cookie_filename (emodpy.bamboo_api_utils.BambooConnection property) set_all_persisted() (emodpy.emod_file.MigrationFiles method) set_climate_constant() (emodpy.emod_file.ClimateFiles method) set_command_line() (emodpy.emod_task.EMODTask method) set_parameter() (emodpy.emod_task.EMODTask method) set_parameter_partial() (emodpy.emod_task.EMODTask class method) set_parameter_sweep_callback() (emodpy.emod_task.EMODTask static method) set_sif() (emodpy.emod_task.EMODTask method) set_task_config() (emodpy.emod_file.ClimateFiles method) (emodpy.emod_file.DemographicsFiles method) (emodpy.emod_file.InputFilesList method) (emodpy.emod_file.MigrationFiles method) (emodpy.reporters.base.Reporters method) sif_filename (emodpy.emod_task.EMODTask attribute) sif_path (emodpy.emod_task.EMODTask attribute) simulation_demographics (emodpy.emod_task.EMODTask attribute) simulation_migrations (emodpy.emod_task.EMODTask attribute) SINGLE_ROUND_TRIPS (emodpy.emod_file.MigrationPattern attribute) Stratify_By_Gender (emodpy.reporters.builtin.ReportNodeDemographics attribute) successful_build_result() (emodpy.bamboo_api_utils.BuildInfo static method) T task TBHIV (emodpy.utils.EradicationBambooBuilds attribute) TBHIV_LINUX (emodpy.utils.EradicationBambooBuilds attribute) TBHIV_WIN (emodpy.utils.EradicationBambooBuilds attribute) template TimeseriesAnalyzer (class in emodpy.analyzers.timeseries_analyzer) to_dict() (emodpy.reporters.base.BaseReporter method) (emodpy.reporters.base.BuiltInReporter method) (emodpy.reporters.base.CustomReporter method) TYPHOID (emodpy.utils.EradicationBambooBuilds attribute) TYPHOID_LINUX (emodpy.utils.EradicationBambooBuilds attribute) TYPHOID_WIN (emodpy.utils.EradicationBambooBuilds attribute) U update_migration_pattern() (emodpy.emod_file.MigrationFiles method) update_parameters() (emodpy.emod_task.EMODTask method) url_exists() (emodpy.bamboo_api_utils.BambooConnection method) use_embedded_python (emodpy.emod_task.EMODTask attribute) W WAYPOINTS_HOME (emodpy.emod_file.MigrationPattern attribute) Windows (emodpy.utils.EradicationPlatformExtension attribute) write_session_cookie() (emodpy.bamboo_api_utils.BambooConnection method)
