Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | P | Q | R | S | T | U | V | W _ __add__() (BasePeople method) A abnormal (BasePeople property) add_births() (People method) add_contacts() (BasePeople method) add_layer() (Contacts method) add_to_queue() (treat_num method) add_to_schedule() (treat_delay method) addtoself() (BasePeople method) administer() (dx method) (tx method) (vx method) age_causal_infection (class in hpvsim.analysis) age_pyramid (class in hpvsim.analysis) age_results (class in hpvsim.analysis) alive_inds (BasePeople property) alive_level0 (BasePeople property) alive_level0_inds (BasePeople property) AlreadyRunError Analyzer (class in hpvsim.analysis) append() (Layer method) apply() (age_results method) (Analyzer method) (BaseScreening method) (BaseTreatment method) (BaseVaccination method) (cancer_detection method) (dynamic_pars method) (Intervention method) (treat_delay method) (treat_num method) apply_death_rates() (People method) av_disutility (dalys property) B BasePeople (class in hpvsim.base) BaseScreening (class in hpvsim.interventions) BaseSim (class in hpvsim.base) BaseTest (class in hpvsim.interventions) BaseTreatment (class in hpvsim.interventions) BaseTriage (class in hpvsim.interventions) BaseTxVx (class in hpvsim.interventions) BaseVaccination (class in hpvsim.interventions) binomial_arr (class in hpvsim.utils) binomial_filter (class in hpvsim.utils) brief() (MultiSim method) (Scenarios method) C calibrate() (Calibration method) Calibration (class in hpvsim.calibration) campaign_screening (class in hpvsim.interventions) campaign_triage (class in hpvsim.interventions) campaign_txvx (class in hpvsim.interventions) campaign_vx (class in hpvsim.interventions) CampaignDelivery (class in hpvsim.interventions) cancer_detection (class in hpvsim.analysis) check_cancer() (People method) check_cancer_deaths() (People method) check_cin() (People method) check_clearance() (People method) check_downloaded (class in hpvsim.data.downloaders) check_eligibility() (BaseScreening method) (BaseTreatment method) (BaseVaccination method) check_hiv_death() (HIVsim method) check_immunity (class in hpvsim.immunity) check_inds() (People method) check_inds_true() (People method) check_migration() (People method) check_progress() (People method) check_save_version (class in hpvsim.misc) check_version (class in hpvsim.misc) choose (class in hpvsim.utils) choose_r (class in hpvsim.utils) choose_w (class in hpvsim.utils) combine() (MultiSim method) compare() (MultiSim method) (Scenarios method) compute_fit() (Sim method) compute_gof (class in hpvsim.misc) compute_mismatch() (age_results method) compute_results() (Sim method) compute_states() (Sim method) compute_summary() (Sim method) Contacts (class in hpvsim.base) convert_rname_flows() (age_results method) convert_rname_stocks() (age_results method) copy() (BaseSim method) count() (BasePeople method) count_any() (BasePeople method) count_by_genotype() (BasePeople method) create_partnerships() (People method) D dalys (class in hpvsim.analysis) date (class in hpvsim.misc) date_keys() (BasePeople method) date_range (in module hpvsim.misc) day (class in hpvsim.misc) daydiff (class in hpvsim.misc) default_dx (class in hpvsim.interventions) default_float (in module hpvsim.defaults) default_int (in module hpvsim.defaults) default_tx (class in hpvsim.interventions) default_vx (class in hpvsim.interventions) defined (class in hpvsim.utils) defined() (BasePeople method) deliver() (BaseTest method) (BaseTxVx method) diff_sims (class in hpvsim.sim) disp() (Intervention method) (MultiSim method) (Scenarios method) dissolve_partnerships() (People method) dt_age (BasePeople property) dtround (class in hpvsim.utils) dur_keys() (BasePeople method) dx (class in hpvsim.interventions) dynamic_pars (class in hpvsim.interventions) E EventSchedule (class in hpvsim.interventions) exp_decay (class in hpvsim.immunity) export_pars() (BaseSim method) export_results() (BaseSim method) F f_inds (BasePeople property) false (class in hpvsim.utils) false() (BasePeople method) false_by_genotype() (BasePeople method) filter() (BasePeople method) filter_inds() (BasePeople method) finalize() (age_causal_infection method) (Analyzer method) (HIVsim method) (Intervention method) (Sim method) find_contacts() (Layer method) find_cutoff (class in hpvsim.utils) FlexDict (class in hpvsim.base) from_df() (Layer method) from_list() (BasePeople method) G get() (BasePeople method) (snapshot method) get_accept_inds() (BaseTreatment method) get_age_distribution (class in hpvsim.data.loaders) get_age_distribution_over_time (class in hpvsim.data.loaders) get_analyzer() (BaseSim method) get_analyzers() (BaseSim method) get_birth_rates (class in hpvsim.data.loaders) get_candidates() (BaseTreatment method) (treat_delay method) (treat_num method) get_country_aliases (class in hpvsim.data.loaders) get_data (class in hpvsim.data.downloaders) get_death_rates (class in hpvsim.data.loaders) get_default_plots (class in hpvsim.defaults) get_doubling_time (class in hpvsim.misc) get_full_pars() (Calibration method) get_hiv_data() (HIVsim method) get_inds() (Layer method) get_intervention() (BaseSim method) get_interventions() (BaseSim method) get_life_expectancy (class in hpvsim.data.loaders) get_pdf (class in hpvsim.utils) get_people_in_state() (tx method) get_png_metadata (class in hpvsim.misc) get_t() (BaseSim method) get_to_plot() (age_results method) get_total_pop (class in hpvsim.data.loaders) get_version_pars (class in hpvsim.misc) git_info (class in hpvsim.misc) H help (class in hpvsim.misc) HIVsim (class in hpvsim.hiv) hpvsim.analysis module hpvsim.base module hpvsim.calibration module hpvsim.data.downloaders module hpvsim.data.loaders module hpvsim.defaults module hpvsim.hiv module hpvsim.immunity module hpvsim.interventions module hpvsim.misc module hpvsim.parameters module hpvsim.people module hpvsim.plotting module hpvsim.population module hpvsim.run module hpvsim.settings module hpvsim.sim module hpvsim.utils module I idefined (class in hpvsim.utils) idefinedi (class in hpvsim.utils) ifalse (class in hpvsim.utils) ifalsei (class in hpvsim.utils) imm_keys() (BasePeople method) increment_age() (People method) indices() (BasePeople method) infect() (People method) infected (BasePeople property) init_analyzers() (Sim method) init_contacts() (BasePeople method) init_flows() (People method) init_genotypes() (Sim method) init_hiv() (Sim method) init_immunity (class in hpvsim.immunity) init_immunity() (Sim method) init_interventions() (Sim method) init_people() (Sim method) init_results() (Sim method) init_sims() (MultiSim method) init_states() (HIVsim static method) (Sim method) init_time_vecs() (Sim method) initialize() (Analyzer method) (BasePeople method) (dynamic_pars method) (Intervention method) (People method) (Sim method) int_age (BasePeople property) Intervention (class in hpvsim.interventions) is_active (BasePeople property) is_female (BasePeople property) is_female_adult (BasePeople property) is_female_alive (BasePeople property) is_male (BasePeople property) is_male_alive (BasePeople property) is_virgin (BasePeople property) itrue (class in hpvsim.utils) itruei (class in hpvsim.utils) iundefined (class in hpvsim.utils) iundefinedi (class in hpvsim.utils) K keys() (BasePeople method) L latent (BasePeople property) Layer (class in hpvsim.base) layer_keys() (BasePeople method) (Sim method) linear_decay (class in hpvsim.immunity) linear_growth (class in hpvsim.immunity) linked_txvx (class in hpvsim.interventions) load (class in hpvsim.misc) load() (BasePeople static method) (BaseSim static method) (MultiSim static method) (Scenarios static method) load_data (class in hpvsim.misc) load_data() (HIVsim method) (Sim method) lock() (BasePeople method) M m_inds (BasePeople property) make_contacts (class in hpvsim.population) make_edgelist() (BasePeople method) make_metapars (class in hpvsim.run) make_naive() (People method) make_pars (class in hpvsim.parameters) make_people (class in hpvsim.population) make_study() (Calibration method) map_entries (class in hpvsim.data.loaders) mean() (MultiSim method) (Result method) median() (MultiSim method) (Result method) members (Layer property) merge() (MultiSim static method) (Scenarios static method) meta_keys() (Layer method) module hpvsim.analysis hpvsim.base hpvsim.calibration hpvsim.data.downloaders hpvsim.data.loaders hpvsim.defaults hpvsim.hiv hpvsim.immunity hpvsim.interventions hpvsim.misc hpvsim.parameters hpvsim.people hpvsim.plotting hpvsim.population hpvsim.run hpvsim.settings hpvsim.sim hpvsim.utils multi_run (class in hpvsim.run) MultiSim (class in hpvsim.run) N n (BaseSim property) n_alive (BasePeople property) n_alive_level0 (BasePeople property) n_binomial (class in hpvsim.utils) n_multinomial (class in hpvsim.utils) n_neg_binomial (class in hpvsim.utils) n_poisson (class in hpvsim.utils) new_hiv_infections() (HIVsim method) P parallel (class in hpvsim.run) parse_study() (Calibration method) ParsObj (class in hpvsim.base) participation_filter (class in hpvsim.utils) People (class in hpvsim.people) Person (class in hpvsim.base) person() (BasePeople method) person_keys() (BasePeople method) plot() (age_pyramid method) (age_results method) (Calibration method) (MultiSim method) (People method) (Scenarios method) (Sim method) plot_age_results() (Scenarios method) plot_compare() (MultiSim method) plot_intervention() (Intervention method) plot_people (class in hpvsim.plotting) plot_result (class in hpvsim.plotting) plot_result() (MultiSim method) plot_scen_age_results (class in hpvsim.plotting) plot_scens (class in hpvsim.plotting) plot_sim (class in hpvsim.plotting) plot_single() (age_results method) poisson (class in hpvsim.utils) pop_inds() (Layer method) pop_layer() (Contacts method) precin (BasePeople property) precompute_waning (class in hpvsim.immunity) Q quick_download (class in hpvsim.data.downloaders) R radiation (class in hpvsim.interventions) reduce() (age_pyramid static method) (age_results static method) (Analyzer static method) (MultiSim method) (Sweep method) remove_data (class in hpvsim.data.downloaders) remove_db() (Calibration method) remove_duplicates() (BasePeople static method) remove_people() (People method) reset() (MultiSim method) reset_layer_pars (class in hpvsim.parameters) reset_layer_pars() (Sim method) Result (class in hpvsim.base) result_keys() (BaseSim method) (MultiSim method) (Scenarios method) result_types() (BaseSim method) round_age (BasePeople property) routine_screening (class in hpvsim.interventions) routine_triage (class in hpvsim.interventions) routine_txvx (class in hpvsim.interventions) routine_vx (class in hpvsim.interventions) RoutineDelivery (class in hpvsim.interventions) run() (MultiSim method) (Scenarios method) (Sim method) (Sweep method) run_sim() (Calibration method) run_trial() (Calibration method) run_workers() (Calibration method) S sample (class in hpvsim.utils) save (class in hpvsim.misc) save() (BasePeople method) (BaseSim method) (MultiSim method) (Scenarios method) savefig (class in hpvsim.misc) scale_flows() (People method) Scenarios (class in hpvsim.run) set_hiv_prognoses() (HIVsim method) set_intervention_attributes (class in hpvsim.interventions) set_metadata() (BaseSim method) set_pars() (BasePeople method) set_prognoses() (People method) set_seed (class in hpvsim.utils) set_severity() (People method) shrink() (Analyzer method) (BaseSim method) (BaseVaccination method) (Intervention method) (MultiSim method) Sim (class in hpvsim.sim) sim_to_sample_pars() (Calibration method) single_run (class in hpvsim.run) snapshot (class in hpvsim.analysis) split() (MultiSim method) state_keys() (BasePeople method) step() (HIVsim method) (Sim method) story() (People method) sum() (Result method) summarize() (MultiSim method) (Scenarios method) (Sim method) Sweep (class in hpvsim.run) T to_arr() (BasePeople method) to_df() (BasePeople method) (BaseSim method) (Layer method) to_excel() (BaseSim method) (MultiSim method) (Scenarios method) to_graph() (BasePeople method) (Contacts method) (Layer method) to_json() (Analyzer method) (BaseSim method) (Calibration method) (Intervention method) (MultiSim method) (Scenarios method) to_list() (BasePeople method) treat_delay (class in hpvsim.interventions) treat_num (class in hpvsim.interventions) trial_pars_to_sim_pars() (Calibration method) trial_to_sim_pars() (Calibration method) true (class in hpvsim.utils) true() (BasePeople method) true_by_genotype() (BasePeople method) tx (class in hpvsim.interventions) U undefined (class in hpvsim.utils) undefined() (BasePeople method) unfilter() (BasePeople method) unlock() (BasePeople method) update() (Layer method) update_cd4() (HIVsim method) update_dict_pars() (Calibration static method) update_dict_pars_from_trial() (Calibration method) update_dict_pars_init_and_bounds() (Calibration method) update_hiv_results() (HIVsim method) update_hpv_progs() (HIVsim method) update_pars() (BaseSim method) (ParsObj method) update_peak_immunity (class in hpvsim.immunity) update_states_post() (People method) update_states_pre() (People method) V validate() (BasePeople method) (Layer method) validate_dt() (Sim method) validate_init_conditions() (Sim method) validate_layer_pars() (Sim method) validate_pars() (Sim method) validate_variables() (age_results method) vx (class in hpvsim.interventions) W worker() (Calibration method)
