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Section Navigation

  • EMOD parameter reference
    • Demographics parameters
    • Configuration parameters
      • Drugs and treatments
      • Enable or disable features
      • General disease
      • Geography and environment
      • Immunity
      • Incubation
      • Infectivity and transmission
      • Input files
      • Larval habitat
      • Migration
      • Mortality and survival
      • Output settings
      • Parasite dynamics
      • Population dynamics
      • Sampling
      • Scalars and multipliers
      • Simulation setup
      • Symptoms and diagnosis
      • Vector control
      • Vector life cycle
    • Campaign parameters
      • Events and event coordinators
      • Node-level interventions
      • Individual-level interventions
      • Waning effect classes
      • Targeting_Config classes
      • Event list
    • Generate a list of all available parameters (a schema)
    • Output files (reports)
      • Custom reporters
      • Error and logging files
      • BinnedReport
      • DemographicsSummary
      • InsetChart
      • PropertyReport
      • ReportEventCounter
      • ReportEventRecorder
      • ReportHumanMigrationTracking
      • ReportNodeDemographics
      • SpatialReport
      • ReportVectorGenetics
      • ReportVectorMigration
      • ReportVectorStats
      • VectorHabitatReport
      • VectorSpeciesReport
      • MalariaImmunityReport
      • MalariaPatientJSONReport
      • MalariaSQLReport
      • MalariaSummaryReport
      • MalariaSurveyJSONAnalyzer
      • ReportDrugStatus
      • ReportMalariaFiltered
      • ReportNodeDemographicsMalaria
      • ReportNodeDemographicsMalariaGenetics
      • ReportSimpleMalariaTransmission
      • ReportVectorStatsMalariaGenetics
      • SpatialReportMalariaFiltered
      • ReportInterventionPopAvg
  • API reference
    • emodpy_malaria package
      • emodpy_malaria.demographics package
      • emodpy_malaria.interventions package
      • emodpy_malaria.migration package
      • emodpy_malaria.reporters package
      • emodpy_malaria.serialization package
      • emodpy_malaria.weather package
      • emodpy_malaria.malaria_config module
      • emodpy_malaria.malaria_vector_species_params module
      • emodpy_malaria.vector_config module
On this page
  • Submodules
  • Reference
  • API reference
  • emodpy_malaria package
  • emodpy_malaria.serialization package

emodpy_malaria.serialization package#

Submodules#

  • emodpy_malaria.serialization.replace_genomes module
    • Genome
      • Genome.convert_char_to_int()
      • Genome.create_genome()
      • Genome.barcode
      • Genome.hashcode
      • Genome.set_allele_roots()
      • Genome.to_dtk_dict()
      • Genome.to_dtk_map_entry()
    • print_hashcodes()
    • get_next_genome()
    • replace_genomes()
    • test_replace_genomes()
  • emodpy_malaria.serialization.replace_genomes_get_next_barcode module
    • get_next_barcode()
  • emodpy_malaria.serialization.serialization_support module
    • write_out_humans_data()
  • emodpy_malaria.serialization.zero_infections module
    • zero_vector_infections()
    • zero_human_infections()
    • zero_infections()
    • zero_infection_path()

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