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  • Install
  • Overview
  • Tutorials
  • Reference
  • FAQ
    • Glossary
    • emod-api
    • emodpy
    • idmtools
    • idmtools-calibra
  • IDM docs
  • GitHub
  • Install
  • Overview
  • Tutorials
  • Reference
  • FAQ
  • Glossary
  • emod-api
  • emodpy
  • idmtools
  • idmtools-calibra
  • IDM docs
  • GitHub

Section Navigation

  • Overview of EMOD software
    • Input files
      • Demographics file
      • Configuration file
      • Campaign file
      • Migration files
      • Climate files
      • Load-balancing files
      • Serialized population file
    • Running a simulation
      • Run a simulation using the command line
      • Run a simulation using mpiexec
      • Speed up EMOD simulations
    • Serializing populations
      • Creating and editing serialized populations
    • Output files (reports)
      • Custom reporters
      • Error and logging files
      • BinnedReport
      • DemographicsSummary
      • InsetChart
      • PropertyReport
      • ReportEventCounter
      • ReportEventRecorder
      • ReportHumanMigrationTracking
      • ReportNodeDemographics
      • SpatialReport
      • ReportVectorGenetics
      • ReportVectorMigration
      • ReportVectorStats
      • VectorHabitatReport
      • VectorSpeciesReport
      • MalariaImmunityReport
      • MalariaPatientJSONReport
      • MalariaSQLReport
      • MalariaSummaryReport
      • MalariaSurveyJSONAnalyzer
      • ReportDrugStatus
      • ReportMalariaFiltered
      • ReportNodeDemographicsMalaria
      • ReportNodeDemographicsMalariaGenetics
      • ReportSimpleMalariaTransmission
      • ReportVectorStatsMalariaGenetics
      • SpatialReportMalariaFiltered
      • ReportInterventionPopAvg
  • Model overview
    • Vector biology
      • Climate and demographics spatial data
      • Larval habitat
      • Vector transmission model
    • Malaria transmission and treatment
      • Malaria infection and immune model
      • Malaria symptoms and diagnostics
      • Antimalarial drugs
    • Disease outbreaks, reservoirs, and endemicity
    • Adding heterogeneity
      • Population density and transmission scaling
      • Individual and node properties
      • Geographic migration
    • Creating campaigns
      • Targeting interventions to nodes or individuals
      • Vaccination and herd immunity
      • Cascade of care
  • Malaria disease overview
  • Overview

Overview#

This section provide an overview of the EMOD malaria model, emodpy-malaria and associated workflow tools, and malaria biology. This includes a basic overview of the software, including the input and output files when running simulations.

  • Overview of EMOD software
    • Input files
    • Running a simulation
    • Serializing populations
    • Output files (reports)
  • Model overview
    • Vector biology
    • Malaria transmission and treatment
    • Disease outbreaks, reservoirs, and endemicity
    • Adding heterogeneity
    • Creating campaigns
  • Malaria disease overview

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Install emodpy-malaria

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Overview of EMOD software

  • Install
  • Overview
  • Tutorials
  • Reference
  • FAQ
  • Glossary
  • emod-api
  • emodpy
  • idmtools
  • idmtools-calibra

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