VectorSpeciesReport#

The vector species output report (VectorSpeciesReport.json) is a JSON-formatted file where the channel data has been sorted into bins. It is identical to the BinnedReport, with the exception that the bins are based on vector species, and provides the average number of adult vectors per node for each species. The vector species report is generated for all malaria or vector contain values in the Vector_Species_Params configuration parameter. For example, if Vector_Species_Params contained “funestus” and “gambiae”, you could be able to see the average number of female vectors per node for both A. funestus and A. gambiae.

To generate this report, you must set Enable_Vector_Species_Report to 1 in the config.json file.

Channels#

The channels section contains the following parameters.

Parameter

Data type

Description

<Channel_Title>

string

The title of the particular channel.

Units

string

The units used for this channel.

Data

array

A list of the channel data at each timestep.

The data channels included are:

Data channel

Description

Adult Vectors Per Node

The average number of adult female vectors in each node on each day for each species.

Fraction Infectious Vectors

The fraction of adult female vectors that are infected and infectious.

Daily EIR

The entomological inoculation rate (EIR), or the number of infected mosquito bites each individual receives each day, on average.

Daily HBR

The average number of mosquito bites received per individual per day.

Fraction Vectors Died Before Feeding

The fraction of adult female vectors that die while attempting to feed indoors. This includes death before feeding (e.g. killed by a bednet), during feeding (e.g. squished = Human_Feeding_Mortality), and after feeding (e.g. landing on an IRS wall).

Fraction Vectors Died During Outdoor Feeding

The fraction of vectors that die while attempting to feed outdoors. The causes are typically due to individual-level outdoor interventions.

Example#

The following is a sample of an VectorSpeciesReport.json file.

{
    "Header": {
        "DateTime": "Mon Dec 21 11:20:38 2020",
        "DTK_Version": "Malaria-Ongoing (bb265ad) Dec 21 2020 11:15:31",
        "Report_Version": "2.1",
        "Timesteps": 180,
        "Subchannel_Metadata": {
            "AxisLabels": [
                [
                    "Vector Species"
                ]
            ],
            "NumBinsPerAxis": [
                [
                    3
                ]
            ],
            "ValuesPerAxis": [
                [
                    [
                        0,
                        0,
                        0
                    ]
                ]
            ],
            "MeaningPerAxis": [
                [
                    [
                        "arabiensis",
                        "funestus",
                        "gambiae"
                    ]
                ]
            ]
        },
        "Channels": 7
    },
    "Channels": {
        "Adult Vectors Per Node": {
            "Units": "",
            "Data": [
                [
                    8795,
                    7720,
                    6735
                ]
            ]
        },
        "Daily EIR": {
            "Units": "",
            "Data": [
                [
                    0.00400000018999,
                    0.02800000086427,
                    0.835000038147
                ]
            ]
        },
        "Daily HBR": {
            "Units": "",
            "Data": [
                [
                    2.785000085831,
                    8.515999794006,
                    3.394000053406
                ]
            ]
        },
        "Percent Infectious Vectors": {
            "Units": "",
            "Data": [
                [
                    0.04697532951832,
                    0.18621134758,
                    0.2092223018408
                ]
            ]
        },
        "Percent Vectors Died Before Feeding": {
            "Units": "",
            "Data": [
                [
                    0.09339272230864,
                    0.1022477596998,
                    0.09913764148951
                ]
            ]
        },
        "Percent Vectors Died During Indoor Feeding": {
            "Units": "",
            "Data": [
                [
                    0.03303108736873,
                    0.0264107119292,
                    0.01262986380607
                ]
            ]
        },
        "Percent Vectors Died During Outdoor Feeding": {
            "Units": "",
            "Data": [
                [
                    0.01304347813129,
                    0.01427712664008,
                    0.03279281407595
                ]
            ]
        }
    }
}