idmtools_models.r.json_r_task module#
idmtools jsonr task.
Copyright 2021, Bill & Melinda Gates Foundation. All rights reserved.
- class idmtools_models.r.json_r_task.JSONConfiguredRTask(command: str | ~idmtools.entities.command_line.CommandLine = <property object>, platform_requirements: ~typing.Set[~idmtools.entities.platform_requirements.PlatformRequirements] = <factory>, _ITask__pre_creation_hooks: ~typing.List[~typing.Callable[[Simulation | IWorkflowItem, IPlatform], ~typing.NoReturn]] = <factory>, _ITask__post_creation_hooks: ~typing.List[~typing.Callable[[Simulation | IWorkflowItem, IPlatform], ~typing.NoReturn]] = <factory>, common_assets: ~idmtools.assets.asset_collection.AssetCollection = <factory>, transient_assets: ~idmtools.assets.asset_collection.AssetCollection = <factory>, image_name: str = None, build: bool = False, build_path: str | None = None, Dockerfile: str | None = None, pull_before_build: bool = True, use_nvidia_run: bool = False, _DockerTask__image_built: bool = False, script_path: str = None, r_path: str = 'Rscript', parameters: dict = <factory>, envelope: str = None, config_file_name: str = 'config.json', is_config_common: bool = False, configfile_argument: str | None = '--config', command_line_argument_no_filename: bool = False)[source]#
Bases:
JSONConfiguredTask
,RTask
JSONConfiguredRTask combines JSONConfiguredTask and RTask.
Notes
TODO Add example references here
- gather_common_assets()[source]#
Return the common assets for a JSON Configured Task.
- Returns:
Assets
- gather_transient_assets() AssetCollection [source]#
Get Transient assets. This should general be the config.json.
- Returns:
Transient assets
- reload_from_simulation(simulation: Simulation, **kwargs)[source]#
Reload task details from a simulation. Used in some fetch operations.
- Parameters:
simulation – Simulation that is parent item
**kwargs –
- Returns:
None
- pre_creation(parent: Simulation | IWorkflowItem, platform: IPlatform)[source]#
Pre-creation event.
Proxy calls to JSONConfiguredTask and RTask
- Parameters:
parent – Parent item
platform – Platform item is being created on
- Returns:
None
- post_creation(parent: Simulation | IWorkflowItem, platform: IPlatform)[source]#
Post-creation of task.
Proxy calls to JSONConfiguredTask and RTask
- Parameters:
parent – Parent item
platform – Platform we are executing on
- Returns:
None
- __init__(command: str | ~idmtools.entities.command_line.CommandLine = <property object>, platform_requirements: ~typing.Set[~idmtools.entities.platform_requirements.PlatformRequirements] = <factory>, _ITask__pre_creation_hooks: ~typing.List[~typing.Callable[[Simulation | IWorkflowItem, IPlatform], ~typing.NoReturn]] = <factory>, _ITask__post_creation_hooks: ~typing.List[~typing.Callable[[Simulation | IWorkflowItem, IPlatform], ~typing.NoReturn]] = <factory>, common_assets: ~idmtools.assets.asset_collection.AssetCollection = <factory>, transient_assets: ~idmtools.assets.asset_collection.AssetCollection = <factory>, image_name: str = None, build: bool = False, build_path: str | None = None, Dockerfile: str | None = None, pull_before_build: bool = True, use_nvidia_run: bool = False, _DockerTask__image_built: bool = False, script_path: str = None, r_path: str = 'Rscript', parameters: dict = <factory>, envelope: str = None, config_file_name: str = 'config.json', is_config_common: bool = False, configfile_argument: str | None = '--config', command_line_argument_no_filename: bool = False) None #
- class idmtools_models.r.json_r_task.JSONConfiguredRTaskSpecification[source]#
Bases:
TaskSpecification
JSONConfiguredRTaskSpecification provides the plugin info for JSONConfiguredRTask.
- get(configuration: dict) JSONConfiguredRTask [source]#
Get instance of JSONConfiguredRTaskSpecification with configuration provided.
- Parameters:
configuration – Configuration for object
- Returns:
JSONConfiguredRTaskSpecification with configuration
- get_example_urls() List[str] [source]#
Get Examples for JSONConfiguredRTask.
- Returns:
List of Urls that point to examples for JSONConfiguredRTask
- get_type() Type[JSONConfiguredRTask] [source]#
Get Type for Plugin.
- Returns:
JSONConfiguredRTask