idmtools_calibra.algorithms package

Subpackages

• idmtools_calibra.algorithms.pbnb package
  • Submodules
    • idmtools_calibra.algorithms.pbnb.c_sub_region module
      • cSubRegion
    • idmtools_calibra.algorithms.pbnb.fun_pbnb_support_functions module
      • fun_sample_points_generator_deterministic()
      • fun_sample_points_generator_noise()
      • turn_to_power()
      • fun_results_organizer_deterministic()
      • fun_results_organizer_noise()
      • fun_order_subregion()
      • fun_replication_update()
      • fun_order_region()
      • fun_pruning_indicator()
      • fun_maintaining_indicator()
      • fun_elite_indicator()
      • fun_worst_indicator()
      • fun_quantile_update()
      • fun_ci_builder()
      • fun_pruning_labeler()
      • fun_maintaining_labeler()
      • fun_reg_branching()
      • fun_plot2D()
    • idmtools_calibra.algorithms.pbnb.m_intial_paramters_setting module
    • idmtools_calibra.algorithms.pbnb.optim_tool_pbnb module
      • OptimToolPBnB

Submodules

• idmtools_calibra.algorithms.fisher_inf_matrix module
  • perturbed_points()
  • compute_fisher_inf_matrix()
  • sample_cov_ellipse()
  • trunc_gauss()
  • div0()
  • near_pd()
• idmtools_calibra.algorithms.generic_iterative_next_point module
  • GenericIterativeNextPoint
    • GenericIterativeNextPoint.set_state()
    • GenericIterativeNextPoint.cleanup()
    • GenericIterativeNextPoint.update_iteration()
    • GenericIterativeNextPoint.get_param_names()
    • GenericIterativeNextPoint.get_samples_for_iteration()
    • GenericIterativeNextPoint.get_state()
    • GenericIterativeNextPoint.prep_for_dict()
    • GenericIterativeNextPoint.set_results_for_iteration()
    • GenericIterativeNextPoint.end_condition()
    • GenericIterativeNextPoint.get_final_samples()
    • GenericIterativeNextPoint.update_summary_table()
    • GenericIterativeNextPoint.get_results_to_cache()
• idmtools_calibra.algorithms.gpc module
  • GPC
    • GPC.from_config()
    • GPC.from_dict()
    • GPC.set_training_data()
    • GPC.save()
    • GPC.define_kernel()
    • GPC.kernel_xx()
    • GPC.kernel_xp()
    • GPC.kxx_gpu_wrapper()
    • GPC.kxp_gpu_wrapper()
    • GPC.assign_rep()
    • GPC.expectation_propagation()
    • GPC.find_posterior_mode()
    • GPC.negative_log_marginal_likelihood()
    • GPC.negative_log_marginal_likelihood_and_gradient()
    • GPC.func_wrapper()
    • GPC.laplace_predict()
    • GPC.ep_predict()
    • GPC.optimize_hyperparameters()
    • GPC.evaluate()
    • GPC.plot_data()
    • GPC.plot_histogram()
    • GPC.plot()
    • GPC.plot_errors()
• idmtools_calibra.algorithms.imis module
  • IMIS
    • IMIS.validate_parameters()
    • IMIS.choose_initial_samples()
    • IMIS.set_initial_samples()
    • IMIS.add_samples()
    • IMIS.get_next_samples_for_iteration()
    • IMIS.choose_next_point_samples()
    • IMIS.generate_variables_from_data()
    • IMIS.get_samples_for_iteration()
    • IMIS.update_iteration()
    • IMIS.update_state()
    • IMIS.update_gaussian()
    • IMIS.update_gaussian_center()
    • IMIS.weighted_distances_from_center()
    • IMIS.update_gaussian_covariance()
    • IMIS.get_param_names()
    • IMIS.verify_valid_samples()
    • IMIS.next_point_fn()
    • IMIS.update_gaussian_probabilities()
    • IMIS.calculate_weighted_covariance()
    • IMIS.end_condition()
    • IMIS.get_final_samples()
    • IMIS.get_state()
    • IMIS.set_state()
    • IMIS.set_results_for_iteration()
    • IMIS.cleanup()
    • IMIS.restore()
• idmtools_calibra.algorithms.next_point_algorithm module
  • NextPointAlgorithm
    • NextPointAlgorithm.set_state()
    • NextPointAlgorithm.restore()
    • NextPointAlgorithm.cleanup()
    • NextPointAlgorithm.get_param_names()
    • NextPointAlgorithm.get_samples_for_iteration()
    • NextPointAlgorithm.get_state()
    • NextPointAlgorithm.set_results_for_iteration()
    • NextPointAlgorithm.end_condition()
    • NextPointAlgorithm.get_final_samples()
    • NextPointAlgorithm.update_iteration()
    • NextPointAlgorithm.prep_for_dict()
    • NextPointAlgorithm.sample_from_function()
    • NextPointAlgorithm.update_summary_table()
    • NextPointAlgorithm.get_results_to_cache()
    • NextPointAlgorithm.generate_samples_from_df()
• idmtools_calibra.algorithms.optim_tool module
  • OptimTool
    • OptimTool.cleanup()
    • OptimTool.verify_param()
    • OptimTool.resolve_args()
    • OptimTool.add_samples()
    • OptimTool.get_samples_for_iteration()
    • OptimTool.clamp()
    • OptimTool.set_results_for_iteration()
    • OptimTool.choose_initial_samples()
    • OptimTool.choose_samples_via_gradient_ascent()
    • OptimTool.choose_and_clamp_hypersphere_samples_for_iteration()
    • OptimTool.sample_hypersphere()
    • OptimTool.end_condition()
    • OptimTool.get_final_samples()
    • OptimTool.prep_for_dict()
    • OptimTool.get_state()
    • OptimTool.set_state()
    • OptimTool.get_param_names()
    • OptimTool.get_r()
• idmtools_calibra.algorithms.optim_tools_pspo module
  • OptimToolPSPO
    • OptimToolPSPO.cleanup()
    • OptimToolPSPO.resolve_args()
    • OptimToolPSPO.add_samples()
    • OptimToolPSPO.get_samples_for_iteration()
    • OptimToolPSPO.clamp()
    • OptimToolPSPO.set_results_for_iteration()
    • OptimToolPSPO.choose_initial_samples()
    • OptimToolPSPO.stochastic_newton_raphson()
    • OptimToolPSPO.choose_and_clamp_samples_for_iteration()
    • OptimToolPSPO.sample_simultaneous_perturbation()
    • OptimToolPSPO.end_condition()
    • OptimToolPSPO.get_final_samples()
    • OptimToolPSPO.prep_for_dict()
    • OptimToolPSPO.get_state()
    • OptimToolPSPO.set_state()
    • OptimToolPSPO.get_param_names()
• idmtools_calibra.algorithms.optim_tools_spsa module
  • OptimToolSPSA
    • OptimToolSPSA.cleanup()
    • OptimToolSPSA.resolve_args()
    • OptimToolSPSA.add_samples()
    • OptimToolSPSA.get_samples_for_iteration()
    • OptimToolSPSA.clamp()
    • OptimToolSPSA.set_results_for_iteration()
    • OptimToolSPSA.choose_initial_samples()
    • OptimToolSPSA.stochastic_newton_raphson()
    • OptimToolSPSA.choose_and_clamp_samples_for_iteration()
    • OptimToolSPSA.sample_simultaneous_perturbation()
    • OptimToolSPSA.end_condition()
    • OptimToolSPSA.get_final_samples()
    • OptimToolSPSA.prep_for_dict()
    • OptimToolSPSA.get_state()
    • OptimToolSPSA.set_state()
    • OptimToolSPSA.get_param_names()
• idmtools_calibra.algorithms.separatrix_bhm module
  • SeparatrixBHM
    • SeparatrixBHM.cleanup()
    • SeparatrixBHM.resolve_args()
    • SeparatrixBHM.add_samples()
    • SeparatrixBHM.get_samples_for_iteration()
    • SeparatrixBHM.set_results_for_iteration()
    • SeparatrixBHM.set_gpc_vec()
    • SeparatrixBHM.choose_initial_samples()
    • SeparatrixBHM.choose_samples_via_history_matching()
    • SeparatrixBHM.end_condition()
    • SeparatrixBHM.get_final_samples()
    • SeparatrixBHM.prep_for_dict()
    • SeparatrixBHM.get_state()
    • SeparatrixBHM.set_state()
    • SeparatrixBHM.get_param_names()