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A
add_campaign_event() (in module emodpy_malaria.interventions.common)
(in module emodpy_malaria.interventions.outbreak)
add_challenge_trial() (in module emodpy_malaria.interventions.malaria_challenge)
add_community_health_worker() (in module emodpy_malaria.interventions.community_health_worker)
add_diagnostic_survey() (in module emodpy_malaria.interventions.diag_survey)
add_drug_campaign() (in module emodpy_malaria.interventions.drug_campaign)
add_drug_resistance() (in module emodpy_malaria.malaria_config)
add_drug_status_report() (in module emodpy_malaria.reporters.builtin)
add_event_recorder() (in module emodpy_malaria.reporters.builtin)
add_fMDA() (in module emodpy_malaria.interventions.drug_campaign)
add_genes_and_alleles() (in module emodpy_malaria.vector_config)
add_habitat_reduction_event() (in module emodpy_malaria.interventions.scale_larval_habitats)
add_human_migration_tracking() (in module emodpy_malaria.reporters.builtin)
add_initial_vectors_per_species() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
add_initial_vectors_per_species_from_csv() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
add_insecticide_resistance() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
add_IPTi() (in module emodpy_malaria.interventions.drug_campaign)
add_itn_scheduled() (in module emodpy_malaria.interventions.bednet)
add_itn_triggered() (in module emodpy_malaria.interventions.bednet)
add_larval_habitat_multiplier() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
add_larvicide() (in module emodpy_malaria.interventions.larvicide)
add_malaria_cotransmission_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_immunity_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_patient_json_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_summary_report() (in module emodpy_malaria.reporters.builtin)
add_malaria_survey_analyzer() (in module emodpy_malaria.reporters.builtin)
add_MDA() (in module emodpy_malaria.interventions.drug_campaign)
add_microsporidia() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
add_MSAT() (in module emodpy_malaria.interventions.drug_campaign)
add_mutation() (in module emodpy_malaria.vector_config)
add_outbreak_individual() (in module emodpy_malaria.interventions.outbreak)
add_outbreak_malaria_genetics() (in module emodpy_malaria.interventions.outbreak)
add_outbreak_malaria_var_genes() (in module emodpy_malaria.interventions.outbreak)
add_outdoorrestkill() (in module emodpy_malaria.interventions.outdoorrestkill)
add_report_event_counter() (in module emodpy_malaria.reporters.builtin)
add_report_fpg_output() (in module emodpy_malaria.reporters.builtin)
add_report_infection_stats_malaria() (in module emodpy_malaria.reporters.builtin)
add_report_intervention_pop_avg() (in module emodpy_malaria.reporters.builtin)
add_report_malaria_filtered() (in module emodpy_malaria.reporters.builtin)
add_report_malaria_filtered_intrahost() (in module emodpy_malaria.reporters.builtin)
add_report_microsporidia() (in module emodpy_malaria.reporters.builtin)
add_report_node_demographics() (in module emodpy_malaria.reporters.builtin)
add_report_node_demographics_malaria() (in module emodpy_malaria.reporters.builtin)
add_report_node_demographics_malaria_genetics() (in module emodpy_malaria.reporters.builtin)
add_report_simulation_stats() (in module emodpy_malaria.reporters.builtin)
add_report_vector_genetics() (in module emodpy_malaria.reporters.builtin)
add_report_vector_migration() (in module emodpy_malaria.reporters.builtin)
add_report_vector_stats() (in module emodpy_malaria.reporters.builtin)
add_report_vector_stats_malaria_genetics() (in module emodpy_malaria.reporters.builtin)
add_rfMDA() (in module emodpy_malaria.interventions.drug_campaign)
add_rfMSAT() (in module emodpy_malaria.interventions.drug_campaign)
add_scale_larval_habitats() (in module emodpy_malaria.interventions.scale_larval_habitats)
add_scheduled_antimalarial_drug() (in module emodpy_malaria.interventions.drug)
add_scheduled_input_eir() (in module emodpy_malaria.interventions.inputeir)
add_scheduled_irs_housing_modification() (in module emodpy_malaria.interventions.irs)
add_scheduled_ivermectin() (in module emodpy_malaria.interventions.ivermectin)
add_scheduled_mosquito_release() (in module emodpy_malaria.interventions.mosquitorelease)
add_scheduled_space_spraying() (in module emodpy_malaria.interventions.spacespraying)
add_scheduled_sugar_trap() (in module emodpy_malaria.interventions.sugartrap)
add_scheduled_usage_dependent_bednet() (in module emodpy_malaria.interventions.usage_dependent_bednet)
add_scheduled_vaccine() (in module emodpy_malaria.interventions.vaccine)
add_spatial_report_malaria_filtered() (in module emodpy_malaria.reporters.builtin)
add_species() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
add_species_drivers() (in module emodpy_malaria.vector_config)
add_sql_report_malaria() (in module emodpy_malaria.reporters.builtin)
add_sql_report_malaria_genetics() (in module emodpy_malaria.reporters.builtin)
add_trait() (in module emodpy_malaria.vector_config)
add_treatment_seeking() (in module emodpy_malaria.interventions.treatment_seeking)
add_triggered_campaign_delay_event() (in module emodpy_malaria.interventions.common)
add_triggered_irs_housing_modification() (in module emodpy_malaria.interventions.irs)
add_triggered_ivermectin() (in module emodpy_malaria.interventions.ivermectin)
add_triggered_usage_dependent_bednet() (in module emodpy_malaria.interventions.usage_dependent_bednet)
add_triggered_vaccine() (in module emodpy_malaria.interventions.vaccine)
add_vector_habitat_report() (in module emodpy_malaria.reporters.builtin)
add_visualizations() (in module emodpy_malaria.reporters.builtin)
adherent_drug() (in module emodpy_malaria.interventions.adherentdrug)
AgesYears (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
AIR_TEMPERATURE (emodpy_malaria.weather.weather_variable.WeatherVariable attribute)
all_vectors_if_none() (in module emodpy_malaria.reporters.builtin)
attributes (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
(emodpy_malaria.weather.weather_set.WeatherSet property)
attributes_dict (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
Author (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
author (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
B
barcode (emodpy_malaria.serialization.replace_genomes.Genome property)
C
check_vectors() (in module emodpy_malaria.reporters.builtin)
config() (emodpy_malaria.reporters.builtin.MalariaImmunityReport method)
(emodpy_malaria.reporters.builtin.MalariaPatientJSONReport method)
(emodpy_malaria.reporters.builtin.MalariaSummaryReport method)
(emodpy_malaria.reporters.builtin.MalariaSurveyJSONAnalyzer method)
(emodpy_malaria.reporters.builtin.ReportDrugStatus method)
(emodpy_malaria.reporters.builtin.ReportEventCounter method)
(emodpy_malaria.reporters.builtin.ReportFpgOutputForObservationalModel method)
(emodpy_malaria.reporters.builtin.ReportHumanMigrationTracking method)
(emodpy_malaria.reporters.builtin.ReportInfectionStatsMalaria method)
(emodpy_malaria.reporters.builtin.ReportInterventionPopAvg method)
(emodpy_malaria.reporters.builtin.ReportMalariaFiltered method)
(emodpy_malaria.reporters.builtin.ReportMalariaFilteredIntraHost method)
(emodpy_malaria.reporters.builtin.ReportMicrosporidia method)
(emodpy_malaria.reporters.builtin.ReportNodeDemographics method)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalaria method)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalariaGenetics method)
(emodpy_malaria.reporters.builtin.ReportSimpleMalariaTransmission method)
(emodpy_malaria.reporters.builtin.ReportSimulationStats method)
(emodpy_malaria.reporters.builtin.ReportVectorGenetics method)
(emodpy_malaria.reporters.builtin.ReportVectorMigration method)
(emodpy_malaria.reporters.builtin.ReportVectorStats method)
(emodpy_malaria.reporters.builtin.ReportVectorStatsMalariaGenetics method)
(emodpy_malaria.reporters.builtin.SpatialReportMalariaFiltered method)
(emodpy_malaria.reporters.builtin.SqlReportMalaria method)
(emodpy_malaria.reporters.builtin.SqlReportMalariaGenetics method)
(emodpy_malaria.reporters.builtin.VectorHabitatReport method)
configure_linear_spline() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
convert_char_to_int() (emodpy_malaria.serialization.replace_genomes.Genome method)
create_genome() (emodpy_malaria.serialization.replace_genomes.Genome method)
create_trait() (in module emodpy_malaria.vector_config)
csv_to_weather() (in module emodpy_malaria.weather)
D
data (emodpy_malaria.weather.weather_data.WeatherData property)
data_id (emodpy_malaria.weather.weather_request.WeatherRequest property)
data_years (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
DataFrameInfo (class in emodpy_malaria.weather.weather_data)
DataSource (class in emodpy_malaria.weather.weather_request)
datavalue_count (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
DatavalueCount (emodpy_malaria.vector_migration.vector_migration.Layer property)
(emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
date_created (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
DateCreated (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
detect_columns() (emodpy_malaria.weather.weather_data.DataFrameInfo class method)
dir_path (emodpy_malaria.weather.weather_set.WeatherSet property)
download (emodpy_malaria.weather.weather_request.RequestReport attribute)
download() (emodpy_malaria.weather.weather_request.WeatherRequest method)
drug_configs_from_code() (in module emodpy_malaria.interventions.drug_campaign)
E
emodpy_malaria
module
emodpy_malaria.demographics
module
emodpy_malaria.demographics.MalariaDemographics
module
emodpy_malaria.interventions
module
emodpy_malaria.interventions.adherentdrug
module
emodpy_malaria.interventions.bednet
module
emodpy_malaria.interventions.common
module
emodpy_malaria.interventions.community_health_worker
module
emodpy_malaria.interventions.diag_survey
module
emodpy_malaria.interventions.drug
module
emodpy_malaria.interventions.drug_campaign
module
emodpy_malaria.interventions.inputeir
module
emodpy_malaria.interventions.irs
module
emodpy_malaria.interventions.ivermectin
module
emodpy_malaria.interventions.larvicide
module
emodpy_malaria.interventions.malaria_challenge
module
emodpy_malaria.interventions.mosquitorelease
module
emodpy_malaria.interventions.outbreak
module
emodpy_malaria.interventions.outdoorrestkill
module
emodpy_malaria.interventions.scale_larval_habitats
module
emodpy_malaria.interventions.spacespraying
module
emodpy_malaria.interventions.sugartrap
module
emodpy_malaria.interventions.treatment_seeking
module
emodpy_malaria.interventions.usage_dependent_bednet
module
emodpy_malaria.interventions.vaccine
module
emodpy_malaria.malaria_config
module
emodpy_malaria.malaria_vector_species_params
module
emodpy_malaria.reporters
module
emodpy_malaria.reporters.builtin
module
emodpy_malaria.serialization
module
emodpy_malaria.serialization.replace_genomes
module
emodpy_malaria.serialization.replace_genomes_get_next_barcode
module
emodpy_malaria.serialization.serialization_support
module
emodpy_malaria.serialization.zero_infections
module
emodpy_malaria.vector_config
module
emodpy_malaria.vector_migration
module
emodpy_malaria.vector_migration.vector_migration
module
emodpy_malaria.weather
module
emodpy_malaria.weather.data_sources
module
emodpy_malaria.weather.weather_data
module
emodpy_malaria.weather.weather_metadata
module
emodpy_malaria.weather.weather_request
module
emodpy_malaria.weather.weather_set
module
emodpy_malaria.weather.weather_utils
module
emodpy_malaria.weather.weather_variable
module
examine_file() (in module emodpy_malaria.vector_migration.vector_migration)
F
file_names (emodpy_malaria.weather.weather_set.WeatherSet property)
file_prefix (emodpy_malaria.weather.weather_request.DataSource property)
files (emodpy_malaria.weather.weather_request.WeatherRequest property)
files_exist (emodpy_malaria.weather.weather_request.WeatherRequest property)
fmda_cfg() (in module emodpy_malaria.interventions.drug_campaign)
format_create_date() (emodpy_malaria.weather.weather_metadata.WeatherAttributes class method)
from_csv() (emodpy_malaria.weather.weather_data.WeatherData class method)
(emodpy_malaria.weather.weather_set.WeatherSet class method)
(in module emodpy_malaria.demographics.MalariaDemographics)
(in module emodpy_malaria.vector_migration.vector_migration)
from_dataframe() (emodpy_malaria.weather.weather_data.WeatherData class method)
(emodpy_malaria.weather.weather_set.WeatherSet class method)
from_demog_and_param_gravity_webservice() (in module emodpy_malaria.vector_migration.vector_migration)
from_demographics_and_gravity_params() (in module emodpy_malaria.vector_migration.vector_migration)
from_dict() (emodpy_malaria.weather.weather_data.WeatherData class method)
from_file() (emodpy_malaria.weather.weather_data.WeatherData class method)
(emodpy_malaria.weather.weather_metadata.WeatherMetadata class method)
(in module emodpy_malaria.vector_migration.vector_migration)
from_files() (emodpy_malaria.weather.weather_set.WeatherSet class method)
from_params() (in module emodpy_malaria.demographics.MalariaDemographics)
(in module emodpy_malaria.vector_migration.vector_migration)
from_pop_csv() (in module emodpy_malaria.demographics.MalariaDemographics)
from_template_node() (in module emodpy_malaria.demographics.MalariaDemographics)
G
GenderDataType (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
generate() (emodpy_malaria.weather.weather_request.WeatherRequest method)
generate_weather() (in module emodpy_malaria.weather)
Genome (class in emodpy_malaria.serialization.replace_genomes)
get_drug_params() (in module emodpy_malaria.malaria_config)
get_file_from_http() (in module emodpy_malaria.malaria_config)
get_next_barcode() (in module emodpy_malaria.serialization.replace_genomes_get_next_barcode)
get_next_genome() (in module emodpy_malaria.serialization.replace_genomes)
get_node_offsets() (emodpy_malaria.vector_migration.vector_migration.VectorMigration method)
get_species_params() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
H
hash_series() (in module emodpy_malaria.weather.weather_utils)
hashcode (emodpy_malaria.serialization.replace_genomes.Genome property)
I
id_reference (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
IdReference (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
InterpolationType (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
invert_dict() (in module emodpy_malaria.weather.weather_utils)
irs_configuration() (in module emodpy_malaria.interventions.irs)
items() (emodpy_malaria.weather.weather_set.WeatherSet method)
K
keys() (emodpy_malaria.weather.weather_set.WeatherSet method)
L
LAND_TEMPERATURE (emodpy_malaria.weather.weather_variable.WeatherVariable attribute)
Layer (class in emodpy_malaria.vector_migration.vector_migration)
LINEAR_INTERPOLATION (emodpy_malaria.vector_migration.vector_migration.VectorMigration attribute)
list() (emodpy_malaria.weather.weather_variable.WeatherVariable class method)
local_dir (emodpy_malaria.weather.weather_request.WeatherRequest property)
LOCAL_MIGRATION (emodpy_malaria.vector_migration.vector_migration.VectorMigration attribute)
M
make_file_paths() (emodpy_malaria.weather.weather_set.WeatherSet class method)
make_path() (in module emodpy_malaria.weather.weather_utils)
MalariaDemographics (class in emodpy_malaria.demographics.MalariaDemographics)
MalariaImmunityReport (class in emodpy_malaria.reporters.builtin)
MalariaPatientJSONReport (class in emodpy_malaria.reporters.builtin)
MalariaSummaryReport (class in emodpy_malaria.reporters.builtin)
MalariaSurveyJSONAnalyzer (class in emodpy_malaria.reporters.builtin)
metadata (emodpy_malaria.weather.weather_data.WeatherData property)
metadata_defaults_dict() (emodpy_malaria.weather.weather_metadata.WeatherAttributes class method)
MigrationType (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
module
emodpy_malaria
emodpy_malaria.demographics
emodpy_malaria.demographics.MalariaDemographics
emodpy_malaria.interventions
emodpy_malaria.interventions.adherentdrug
emodpy_malaria.interventions.bednet
emodpy_malaria.interventions.common
emodpy_malaria.interventions.community_health_worker
emodpy_malaria.interventions.diag_survey
emodpy_malaria.interventions.drug
emodpy_malaria.interventions.drug_campaign
emodpy_malaria.interventions.inputeir
emodpy_malaria.interventions.irs
emodpy_malaria.interventions.ivermectin
emodpy_malaria.interventions.larvicide
emodpy_malaria.interventions.malaria_challenge
emodpy_malaria.interventions.mosquitorelease
emodpy_malaria.interventions.outbreak
emodpy_malaria.interventions.outdoorrestkill
emodpy_malaria.interventions.scale_larval_habitats
emodpy_malaria.interventions.spacespraying
emodpy_malaria.interventions.sugartrap
emodpy_malaria.interventions.treatment_seeking
emodpy_malaria.interventions.usage_dependent_bednet
emodpy_malaria.interventions.vaccine
emodpy_malaria.malaria_config
emodpy_malaria.malaria_vector_species_params
emodpy_malaria.reporters
emodpy_malaria.reporters.builtin
emodpy_malaria.serialization
emodpy_malaria.serialization.replace_genomes
emodpy_malaria.serialization.replace_genomes_get_next_barcode
emodpy_malaria.serialization.serialization_support
emodpy_malaria.serialization.zero_infections
emodpy_malaria.vector_config
emodpy_malaria.vector_migration
emodpy_malaria.vector_migration.vector_migration
emodpy_malaria.weather
emodpy_malaria.weather.data_sources
emodpy_malaria.weather.weather_data
emodpy_malaria.weather.weather_metadata
emodpy_malaria.weather.weather_request
emodpy_malaria.weather.weather_set
emodpy_malaria.weather.weather_utils
emodpy_malaria.weather.weather_variable
N
name (emodpy_malaria.weather.weather_request.DataSource property)
new_intervention_as_file() (in module emodpy_malaria.interventions.bednet)
(in module emodpy_malaria.interventions.drug)
(in module emodpy_malaria.interventions.inputeir)
(in module emodpy_malaria.interventions.irs)
(in module emodpy_malaria.interventions.larvicide)
(in module emodpy_malaria.interventions.mosquitorelease)
(in module emodpy_malaria.interventions.spacespraying)
(in module emodpy_malaria.interventions.sugartrap)
(in module emodpy_malaria.interventions.usage_dependent_bednet)
(in module emodpy_malaria.interventions.vaccine)
node_column (emodpy_malaria.weather.weather_data.DataFrameInfo property)
node_count (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
node_offset_str (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
node_offsets (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
NodeCount (emodpy_malaria.vector_migration.vector_migration.Layer property)
(emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
NodeOffsets (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
Nodes (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
nodes (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
O
offset_nodes (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
ONE_FOR_EACH_GENDER (emodpy_malaria.vector_migration.vector_migration.VectorMigration attribute)
P
parameters (emodpy_malaria.reporters.builtin.MalariaImmunityReport attribute)
(emodpy_malaria.reporters.builtin.MalariaPatientJSONReport attribute)
(emodpy_malaria.reporters.builtin.MalariaSummaryReport attribute)
(emodpy_malaria.reporters.builtin.MalariaSurveyJSONAnalyzer attribute)
(emodpy_malaria.reporters.builtin.ReportDrugStatus attribute)
(emodpy_malaria.reporters.builtin.ReportEventCounter attribute)
(emodpy_malaria.reporters.builtin.ReportFpgOutputForObservationalModel attribute)
(emodpy_malaria.reporters.builtin.ReportHumanMigrationTracking attribute)
(emodpy_malaria.reporters.builtin.ReportInfectionStatsMalaria attribute)
(emodpy_malaria.reporters.builtin.ReportInterventionPopAvg attribute)
(emodpy_malaria.reporters.builtin.ReportMalariaFiltered attribute)
(emodpy_malaria.reporters.builtin.ReportMalariaFilteredIntraHost attribute)
(emodpy_malaria.reporters.builtin.ReportMicrosporidia attribute)
(emodpy_malaria.reporters.builtin.ReportNodeDemographics attribute)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalaria attribute)
(emodpy_malaria.reporters.builtin.ReportNodeDemographicsMalariaGenetics attribute)
(emodpy_malaria.reporters.builtin.ReportSimpleMalariaTransmission attribute)
(emodpy_malaria.reporters.builtin.ReportSimulationStats attribute)
(emodpy_malaria.reporters.builtin.ReportVectorGenetics attribute)
(emodpy_malaria.reporters.builtin.ReportVectorMigration attribute)
(emodpy_malaria.reporters.builtin.ReportVectorStats attribute)
(emodpy_malaria.reporters.builtin.ReportVectorStatsMalariaGenetics attribute)
(emodpy_malaria.reporters.builtin.SpatialReportMalariaFiltered attribute)
(emodpy_malaria.reporters.builtin.SqlReportMalaria attribute)
(emodpy_malaria.reporters.builtin.SqlReportMalariaGenetics attribute)
(emodpy_malaria.reporters.builtin.VectorHabitatReport attribute)
parse_date() (in module emodpy_malaria.weather.weather_utils)
PIECEWISE_CONSTANT (emodpy_malaria.vector_migration.vector_migration.VectorMigration attribute)
print_hashcodes() (in module emodpy_malaria.serialization.replace_genomes)
provenance (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
R
RAINFALL (emodpy_malaria.weather.weather_variable.WeatherVariable attribute)
REGIONAL_MIGRATION (emodpy_malaria.vector_migration.vector_migration.VectorMigration attribute)
RELATIVE_HUMIDITY (emodpy_malaria.weather.weather_variable.WeatherVariable attribute)
replace_genomes() (in module emodpy_malaria.serialization.replace_genomes)
report (emodpy_malaria.weather.weather_request.WeatherRequest property)
ReportDrugStatus (class in emodpy_malaria.reporters.builtin)
ReportEventCounter (class in emodpy_malaria.reporters.builtin)
ReportFpgOutputForObservationalModel (class in emodpy_malaria.reporters.builtin)
ReportHumanMigrationTracking (class in emodpy_malaria.reporters.builtin)
ReportInfectionStatsMalaria (class in emodpy_malaria.reporters.builtin)
ReportInterventionPopAvg (class in emodpy_malaria.reporters.builtin)
ReportMalariaFiltered (class in emodpy_malaria.reporters.builtin)
ReportMalariaFilteredIntraHost (class in emodpy_malaria.reporters.builtin)
ReportMicrosporidia (class in emodpy_malaria.reporters.builtin)
ReportNodeDemographics (class in emodpy_malaria.reporters.builtin)
ReportNodeDemographicsMalaria (class in emodpy_malaria.reporters.builtin)
ReportNodeDemographicsMalariaGenetics (class in emodpy_malaria.reporters.builtin)
ReportSimpleMalariaTransmission (class in emodpy_malaria.reporters.builtin)
ReportSimulationStats (class in emodpy_malaria.reporters.builtin)
ReportVectorGenetics (class in emodpy_malaria.reporters.builtin)
ReportVectorMigration (class in emodpy_malaria.reporters.builtin)
ReportVectorStats (class in emodpy_malaria.reporters.builtin)
ReportVectorStatsMalariaGenetics (class in emodpy_malaria.reporters.builtin)
RequestReport (class in emodpy_malaria.weather.weather_request)
required_metadata_defaults_dict() (emodpy_malaria.weather.weather_metadata.WeatherAttributes class method)
S
SAME_FOR_BOTH_GENDERS (emodpy_malaria.vector_migration.vector_migration.VectorMigration attribute)
save_json() (in module emodpy_malaria.weather.weather_utils)
select_weather_files() (emodpy_malaria.weather.weather_set.WeatherSet class method)
series_count (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
series_len (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
series_unique_count (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
set_allele_roots() (emodpy_malaria.serialization.replace_genomes.Genome method)
set_drug_param() (in module emodpy_malaria.malaria_config)
set_max_larval_capacity() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
set_parasite_genetics_params() (in module emodpy_malaria.malaria_config)
set_risk_high() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
set_risk_lowmedium() (emodpy_malaria.demographics.MalariaDemographics.MalariaDemographics method)
set_species_param() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
set_team_defaults() (in module emodpy_malaria.malaria_config)
(in module emodpy_malaria.vector_config)
set_team_drug_params() (in module emodpy_malaria.malaria_config)
spatial_resolution (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
SpatialReportMalariaFiltered (class in emodpy_malaria.reporters.builtin)
species_params() (in module emodpy_malaria.malaria_vector_species_params)
SqlReportMalaria (class in emodpy_malaria.reporters.builtin)
SqlReportMalariaGenetics (class in emodpy_malaria.reporters.builtin)
step_column (emodpy_malaria.weather.weather_data.DataFrameInfo property)
T
test_replace_genomes() (in module emodpy_malaria.serialization.replace_genomes)
to_csv() (emodpy_malaria.weather.weather_data.WeatherData method)
(emodpy_malaria.weather.weather_set.WeatherSet method)
(in module emodpy_malaria.vector_migration.vector_migration)
to_dataframe() (emodpy_malaria.weather.weather_data.WeatherData method)
(emodpy_malaria.weather.weather_set.WeatherSet method)
to_dict() (emodpy_malaria.weather.weather_data.WeatherData method)
to_dtk_dict() (emodpy_malaria.serialization.replace_genomes.Genome method)
to_dtk_map_entry() (emodpy_malaria.serialization.replace_genomes.Genome method)
to_file() (emodpy_malaria.vector_migration.vector_migration.VectorMigration method)
(emodpy_malaria.weather.weather_data.WeatherData method)
(emodpy_malaria.weather.weather_metadata.WeatherMetadata method)
to_files() (emodpy_malaria.weather.weather_set.WeatherSet method)
Tool (emodpy_malaria.vector_migration.vector_migration.VectorMigration property)
tool (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
total_value_count (emodpy_malaria.weather.weather_metadata.WeatherMetadata property)
U
update() (emodpy_malaria.weather.weather_metadata.WeatherAttributes method)
update_resolution (emodpy_malaria.weather.weather_metadata.WeatherAttributes property)
V
validate() (emodpy_malaria.weather.weather_data.WeatherData method)
(emodpy_malaria.weather.weather_metadata.WeatherAttributes method)
(emodpy_malaria.weather.weather_metadata.WeatherMetadata method)
(emodpy_malaria.weather.weather_request.WeatherArgs method)
(emodpy_malaria.weather.weather_set.WeatherSet method)
validate_str_value() (in module emodpy_malaria.weather.weather_utils)
validate_types() (emodpy_malaria.weather.weather_variable.WeatherVariable class method)
value_column (emodpy_malaria.weather.weather_data.DataFrameInfo property)
values() (emodpy_malaria.weather.weather_set.WeatherSet method)
VectorHabitatReport (class in emodpy_malaria.reporters.builtin)
VectorMigration (class in emodpy_malaria.vector_migration.vector_migration)
W
weather_columns (emodpy_malaria.weather.weather_set.WeatherSet property)
weather_to_csv() (in module emodpy_malaria.weather)
weather_variables (emodpy_malaria.weather.weather_request.DataSource property)
(emodpy_malaria.weather.weather_set.WeatherSet property)
WeatherArgs (class in emodpy_malaria.weather.weather_request)
WeatherAttributes (class in emodpy_malaria.weather.weather_metadata)
WeatherData (class in emodpy_malaria.weather.weather_data)
WeatherMetadata (class in emodpy_malaria.weather.weather_metadata)
WeatherRequest (class in emodpy_malaria.weather.weather_request)
WeatherSet (class in emodpy_malaria.weather.weather_set)
WeatherVariable (class in emodpy_malaria.weather.weather_variable)
write_out_humans_data() (in module emodpy_malaria.serialization.serialization_support)
Y
ymd() (in module emodpy_malaria.weather.weather_utils)
Z
zero_human_infections() (in module emodpy_malaria.serialization.zero_infections)
zero_infection_path() (in module emodpy_malaria.serialization.zero_infections)
zero_infections() (in module emodpy_malaria.serialization.zero_infections)
zero_vector_infections() (in module emodpy_malaria.serialization.zero_infections)
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